updating documentation

R/read_EVdir_exports.R

@@ -18,8 +18,9 @@
 #' The default is hakeflag=2, keeping just adult hake.
 #'
 #' @examples
+#' \dontrun{
 #' temp<-read_EV_exports(SurveyName, DirNameFile,database=1,exportloc=1)
-#'
+#' }
 #' @export
 
 read_EVdir_exports<-function(SurveyName, DirNameFile,database=1,exportloc=1,sheet=NULL,hakeflag=2,...){

R/read_proc_reports.R

@@ -7,12 +7,14 @@
 #'  Export_dir as the directory that the exported files are in.
 #' @param sheet is an optional argument to denote which sheet of the DirNameFile
 #' want to use. This defaults to the first sheet if not set.
-#' @param hakeflag: adult hake (hakeflag=2), not filtering for hake (hakeflag=-1), 
-#' age-0 hake (hakeflag=0), age-1 hake only(hakeflag=1), all hake (hakeflag=3), age-1+ (hakeflag=4).  
+#' @param hakeflag: adult hake (hakeflag=2), not filtering for hake (hakeflag=-1),
+#' age-0 hake (hakeflag=0), age-1 hake only(hakeflag=1), all hake (hakeflag=3), age-1+ (hakeflag=4).
 #' set to 1 if want age1+ numbers, set to 0 (or other number) if want age2+.  Defaults to age2+
 
 #' @examples
+#' \dontrun{
 #' temp<-read_proc_reports(SurveyName, DirNameFile,sheet)
+#' }
 #'
 #' @export
 #'
@@ -33,7 +35,7 @@ read_proc_reports<-function(SurveyName, DirNameFile,sheet=NULL,hakeflag=2,...){
           Exind<-44  #look here for age-2+
           Agepath<-'Age2+'
      }
-     
+
      #setup folders to read in data
      ReportBasePath<-as.character(DirTable_yr$Report_Base_Path[1])
      ReportYearPath<-file.path(ReportBasePath,'Reports',sheet,Agepath)  #sheet is the case in this case

R/read_proc_reports_abund.R

@@ -12,8 +12,9 @@
 #' set to 1 if want age1+ numbers, set to 0 (or other number) if want age2+.  Defaults to age2+
 
 #' @examples
+#'  \dontrun{
 #' temp<-read_proc_reports_abund(SurveyName, DirNameFile,sheet, hakeflag)
-#'
+#' }
 #' @export
 #'
 

R/read_proc_reports_abund_cross.R

@@ -16,7 +16,9 @@
 #' Cannot read in age-1 biomass for age-2+ method.  Method = 1 is for age-1+ method, method = 2
 #' is for the age-2+ method.
 #' @examples
+#' \dontrun{
 #' temp<-read_proc_reports_cross(SurveyName, DirNameFile,sheet,hakeflag, method)
+#' }
 #'
 #' @export
 #'

R/read_spat_unkriged_reports.R

@@ -10,7 +10,9 @@
 #' @param hakeflag. adult hake (hakeflag=2), not filtering for hake (hakeflag=-1),
 #' age-0 hake (hakeflag=0), age-1 hake only (hakeflag=1), all hake (hakeflag=3), age-1+ (hakeflag=4).
 #' @examples
+#' \dontrun{
 #' temp<-read_spat_unkriged_reports(SurveyName, DirNameFile,sheet,hakeflag=2)
+#'}
 #'
 #' @export
 #'