refactor recruitment deviations to log space #143
Workflow file for this run
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| # Get GoogleTest code coverage | |
| name: get-gtest-codecov | |
| # on specifies the build triggers. See more info at https://docs.github.com/en/actions/learn-github-actions/events-that-trigger-workflows | |
| on: | |
| workflow_dispatch: | |
| push: | |
| branches: | |
| - main | |
| paths-ignore: | |
| - .devcontainer | |
| - .github | |
| - 'LICENSE' | |
| - 'README.md' | |
| - 'CONTRIBUTING.md' | |
| - 'Rbuildignore' | |
| - '.gitignore' | |
| - 'man' | |
| pull_request: | |
| branches: | |
| - main | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install Ninja | |
| run: sudo apt-get install ninja-build | |
| - uses: r-lib/actions/setup-r@v2 | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::remotes | |
| - name: install local version of FIMS | |
| run: remotes::install_local(upgrade= "always", force = TRUE) | |
| shell: Rscript {0} | |
| - name: setup for gtest | |
| run: FIMS:::setup_gtest() | |
| shell: Rscript {0} | |
| #note: the following configure, build and test steps could instead | |
| # be run from r using FIMS::setup_and_run_gtest() | |
| - name: Configure | |
| # Do not run -DBUILD_DOC=OFF locally. Only run cmake -S . -B build -G Ninja locally. | |
| run: | | |
| cmake -S . -B build -DBUILD_DOC=OFF -G Ninja | |
| - name: Build | |
| run: | | |
| cmake --build build --parallel 16 | |
| - name: Test | |
| run: | | |
| ctest --test-dir build --parallel 16 | |
| - name: Install gcovr | |
| run: | | |
| pip install gcovr | |
| - name: Run gcovr | |
| run: | | |
| gcovr --exclude tests/ --cobertura coverage.xml | |
| - name: save coverage report | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: coverage.xml | |
| path: coverage.xml | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| files: coverage.xml | |