fix rec_nll evaluate bug

NOAA-FIMS · Jun 4, 2024 · 5c3aee3 · 5c3aee3
1 parent 93c2625
commit 5c3aee3
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diff --git a/inst/include/interface/rcpp/rcpp_objects/rcpp_recruitment.hpp b/inst/include/interface/rcpp/rcpp_objects/rcpp_recruitment.hpp
@@ -156,6 +156,7 @@ class BevertonHoltRecruitmentInterface : public RecruitmentInterfaceBase {
         info->RegisterParameter(recruitment->log_recruit_devs[i]);
       }
     } else {
+      recruitment->estimate_log_recruit_devs = estimate_log_devs;
       for (size_t i = 0; i < recruitment->log_recruit_devs.size(); i++) {
         recruitment->log_recruit_devs[i] = this->log_devs[i];
       }

diff --git a/vignettes/fims-demo.Rmd b/vignettes/fims-demo.Rmd
@@ -332,6 +332,11 @@ sdr_fixed <- summary(sdr, "fixed")
 report <- obj$report()
 
 print(sdr_fixed)
+
+#report out nll components
+report$rec_nll #recruitment
+report$index_nll #fishery catch and survey index
+report$age_comp_nll #fishery and survey age composition
 ```