Handle two quantification table folders of GNPS feature-based workflow #108
Workflow file for this run
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| name: Check format and static typing | |
| permissions: | |
| contents: read | |
| on: | |
| push: | |
| branches: | |
| - dev | |
| - main | |
| paths: | |
| - '**.py' | |
| - '.github/workflows/format-typing-check.yml' | |
| pull_request: | |
| branches: | |
| - dev | |
| - main | |
| paths: | |
| - '**.py' | |
| - '.github/workflows/format-typing-check.yml' | |
| types: | |
| - opened | |
| - reopened | |
| - synchronize | |
| - ready_for_review | |
| jobs: | |
| format-check: | |
| name: Check code format | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python 3.10 | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: '3.10' | |
| - name: Install ruff and mypy | |
| run: | | |
| pip install ruff mypy typing_extensions \ | |
| types-Deprecated types-beautifulsoup4 types-jsonschema types-networkx pandas-stubs | |
| - name: Get all changed python files | |
| id: changed-python-files | |
| uses: tj-actions/changed-files@v44 | |
| with: | |
| files: | | |
| **.py | |
| - name: Check format using ruff | |
| if: steps.changed-python-files.outputs.any_changed == 'true' | |
| env: | |
| ALL_CHANGED_FILES: ${{ steps.changed-python-files.outputs.all_changed_files }} | |
| run: | | |
| ruff check ${ALL_CHANGED_FILES} | |
| - name: Check static typing using mypy | |
| if: steps.changed-python-files.outputs.any_changed == 'true' | |
| env: | |
| ALL_CHANGED_FILES: ${{ steps.changed-python-files.outputs.all_changed_files }} | |
| run: | | |
| mypy ${ALL_CHANGED_FILES} |