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fix installation failure cased by deprecated sklearn issue in bigscape
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CunliangGeng committed Aug 9, 2023
1 parent 717dc77 commit 0d1d825
Showing 1 changed file with 1 addition and 6 deletions.
7 changes: 1 addition & 6 deletions bin/install-nplinker-deps
Original file line number Diff line number Diff line change
Expand Up @@ -121,19 +121,14 @@ pip install -q -U pip setuptools
#------------------------------------------------------------------------------

#--- Install BigScape
## Note: DO NOT pip install bigscape until its modular version
echo "🔥 Start installing BigScape ..."
# TODO: use original repo when multiprocessing bug fixed
[[ -d BiG-SCAPE ]] || git clone https://github.com/medema-group/BiG-SCAPE.git
# [[ -d BiG-SCAPE ]] || git clone https://github.com/CunliangGeng/BiG-SCAPE.git
cd BiG-SCAPE
git config --add advice.detachedHead false # disable advice
git config pull.ff only
git checkout master
git pull
git checkout de55e9c0cecae9648320308f98d3897f9aef3a0a # tag v1.1.5
# git checkout dev
# git pull
git checkout 99d07e57882fc5fa6780f8254823fd3d1abf3bc6 # Commits on Jul 21, 2023
pip install -q -U -r requirements.txt
chmod 754 bigscape.py
chmod 664 domains_color_file.tsv
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