Update version to 2.0.0-alpha.4

NPLinker · Jul 29, 2024 · 9bb54da · 9bb54da
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -1,5 +1,27 @@
 # Changelog
 
+## [v2.0.0-alpha.4](https://github.com/NPLinker/nplinker/tree/v2.0.0-alpha.4) (2024-07-29)
+
+[Full Changelog](https://github.com/NPLinker/nplinker/compare/v2.0.0-alpha.3...v2.0.0-alpha.4)
+
+**Implemented enhancements:**
+
+- Select subset of the data [\#265](https://github.com/NPLinker/nplinker/issues/265)
+
+**Closed issues:**
+
+- Fix code scanning alert - Token-Permissions [\#268](https://github.com/NPLinker/nplinker/issues/268)
+- support bigscape v2 [\#216](https://github.com/NPLinker/nplinker/issues/216)
+- Abstraction of run\_bigscape function [\#115](https://github.com/NPLinker/nplinker/issues/115)
+
+**Merged pull requests:**
+
+- update doc for bigscape [\#270](https://github.com/NPLinker/nplinker/pull/270) ([CunliangGeng](https://github.com/CunliangGeng))
+- add filter method to LinkGraph [\#269](https://github.com/NPLinker/nplinker/pull/269) ([CunliangGeng](https://github.com/CunliangGeng))
+- Add OSSF Scorecard action and badge  [\#267](https://github.com/NPLinker/nplinker/pull/267) ([CunliangGeng](https://github.com/CunliangGeng))
+- improve docstrings [\#266](https://github.com/NPLinker/nplinker/pull/266) ([CunliangGeng](https://github.com/CunliangGeng))
+- Run bigscape v2 [\#251](https://github.com/NPLinker/nplinker/pull/251) ([adraismawur](https://github.com/adraismawur))
+
 ## [v2.0.0-alpha.3](https://github.com/NPLinker/nplinker/tree/v2.0.0-alpha.3) (2024-07-11)
 
 [Full Changelog](https://github.com/NPLinker/nplinker/compare/v2.0.0-alpha.2...v2.0.0-alpha.3)

diff --git a/CITATION.cff b/CITATION.cff
@@ -45,7 +45,7 @@ authors:
   -
     given-names:  Marnix
     family-names:  Medema
-version: "2.0.0-alpha.3"
+version: "2.0.0-alpha.4"
 repository-code: "https://github.com/NPLinker/nplinker"
 keywords:
   - Genome

diff --git a/pyproject.toml b/pyproject.toml
@@ -6,7 +6,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "nplinker"
-version = "2.0.0-alpha.3"
+version = "2.0.0-alpha.4"
 description = "Natural Products Linker"
 readme = "README.md"
 requires-python = ">=3.9"

diff --git a/src/nplinker/__init__.py b/src/nplinker/__init__.py
@@ -7,7 +7,7 @@
 
 __author__ = "Cunliang Geng"
 __email__ = "c.geng@esciencecenter.nl"
-__version__ = "2.0.0-alpha.3"
+__version__ = "2.0.0-alpha.4"
 
 
 __all__ = ["NPLinker", "setup_logging"]