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Update loading of genomics data #197

Merged
merged 6 commits into from
Jan 24, 2024
Merged

Update loading of genomics data #197

merged 6 commits into from
Jan 24, 2024

Commits on Jan 24, 2024

  1. update vscode settings.json 

    - add the missing comma
- the values were updated automatically based on latest schema of vscode
    @CunliangGeng
    CunliangGeng committed Jan 24, 2024
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  2. update helper function add_strain_to_bgc 

    Change raising not found error to only logging it.
    @CunliangGeng
    CunliangGeng committed Jan 24, 2024
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  3. update helper function add_bgc_to_gcf 

    - remove raising errors
- add logging info
- add return values
    @CunliangGeng
    CunliangGeng committed Jan 24, 2024
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  4. remove helper functions get_bgcs_from_gcfs and get_strains_from_bgcs

    @CunliangGeng
    CunliangGeng committed Jan 24, 2024
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  5. Update test_utils.py

    @CunliangGeng
    CunliangGeng committed Jan 24, 2024
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  6. update the assignment of attributes self.bgcs and self.gcfs

    @CunliangGeng
    CunliangGeng committed Jan 24, 2024
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