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refactor logging control #243

Merged
merged 13 commits into from
May 21, 2024
Merged

refactor logging control #243

merged 13 commits into from
May 21, 2024

Commits on May 9, 2024

  1. add dependency rich

    @CunliangGeng
    CunliangGeng committed May 9, 2024
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  2. remove logging NullHandler from modules

    @CunliangGeng
    CunliangGeng committed May 9, 2024
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Commits on May 10, 2024

  1. add function setup_logging

    @CunliangGeng
    CunliangGeng committed May 10, 2024
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  2. use standard logging instead of LogConfig

    @CunliangGeng
    CunliangGeng committed May 10, 2024
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  3. replace print with logger.info

    @CunliangGeng
    CunliangGeng committed May 10, 2024
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  4. Delete logconfig.py

    @CunliangGeng
    CunliangGeng committed May 10, 2024
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  5. remove dependency tqdm 

    use rich.progress instead
    @CunliangGeng
    CunliangGeng committed May 10, 2024
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  6. replace tqdm with rich.progress for displaying progress bar

    @CunliangGeng
    CunliangGeng committed May 10, 2024
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  7. update nplinker configs for logging 

    - update comments
- rename `to_stdout` to `use_console`

- Remove `cast=Path` for `log.file`, as the config variable is first cast, then examined on its type.
    @CunliangGeng
    CunliangGeng committed May 10, 2024
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  8. update logging setup in NPLinker class

    @CunliangGeng
    CunliangGeng committed May 10, 2024
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  9. print out configs when initializing NPLinker class

    @CunliangGeng
    CunliangGeng committed May 10, 2024
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  10. change log message from debug to info

    @CunliangGeng
    CunliangGeng committed May 10, 2024
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  11. Update __init__.py

    @CunliangGeng
    CunliangGeng committed May 10, 2024
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