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Updated AdvancedMH.jl wrapper and fixed compatibility issue. #322

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@Alexsp32 Alexsp32 commented Dec 5, 2023

#320 was caused due to a breaking change in how AdvancedMH.jl handles the init_params keyword. initial_params is now required instead. I've removed compatibility for lower versions of AdvancedMH.jl to be safe.

#321 Has a non-breaking change to the movement-related keywords. Using the old move_ratio and internal_ratio will now produce a warning. Old keywords could be removed entirely after some time.

Alexsp32 and others added 24 commits August 25, 2023 09:50
`quantise_diatomic` is now able to process a single configuration
or a vector of multiple configurations.
This improves performance for multiple configurations,
as only one potential-specific binding curve is
generated to analyse all configurations.
Added functions to calculate classical translational, rotational and vibrational energies
from the ro-vibrational quantum numbers from quantise_diatomic.
AdvancedMH or one of its dependencies may have updated a keyword from "initial_config" to "initial_params".
This caused NQCD to not deliver initial positions to the sampling chain correctly.
- Update ThermalMonteCarlo.jl with new keywords movement_ratio and stop_ratio, where movement_ratio=1-stop_ratio
- Add warning for deprecated kwargs.
- Update documentation with information about new keywords
@Alexsp32 Alexsp32 self-assigned this Dec 5, 2023
@Alexsp32 Alexsp32 marked this pull request as ready for review December 5, 2023 12:12
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Alexsp32 commented Dec 5, 2023

The last commit didn't actually pin MKL_jll like I wanted, but for some reason, tests are working now...

@Alexsp32 Alexsp32 assigned Alexsp32 and unassigned Alexsp32 Dec 6, 2023
@Alexsp32 Alexsp32 removed the request for review from jamesgardner1421 December 11, 2023 09:36
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There are some additional changes in here that aren't related to this pull request.

I've opened a new one: #325

@Alexsp32 Alexsp32 closed this Dec 11, 2023
@Alexsp32 Alexsp32 deleted the advancedmh_update branch December 11, 2023 11:59
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