Update

.github/ISSUE_TEMPLATE/bug_report.yaml

@@ -13,7 +13,7 @@ body:
           required: true
         - label: >
             I have confirmed this bug exists on the
-            [latest version](https://github.com/NREL/gaps/releases/latest) of GAPs.
+            [latest version](https://github.com/NatLabRockies/gaps/releases/latest) of GAPs.
           required: true
         - label: >
             I have confirmed this bug exists on the main branch of GAPs.
@@ -72,4 +72,4 @@ body:
     attributes:
       label: Charge code
       placeholder: >
-        If you are at NREL and fixing this bug is urgent, please provide a charge code
+        If you are at NLR and fixing this bug is urgent, please provide a charge code

.github/ISSUE_TEMPLATE/config.yml

@@ -1,7 +1,7 @@
 blank_issues_enabled: true
 contact_links:
   - name: Question
-    url: https://github.com/NREL/reV/discussions
+    url: https://github.com/NatLabRockies/reV/discussions
     about: |
       Ask questions about the reV suite (including GAPs) and discuss with
       the developers and other users here. If you have a question like "How

.github/ISSUE_TEMPLATE/documentation_improvement.yaml

@@ -10,7 +10,7 @@ body:
       options:
         - label: >
             I have checked that the issue still exists on the latest versions of the docs
-            on `main` [here](https://nrel.github.io/gaps/)
+            on `main` [here](https://natlabrockies.github.io/gaps/)
           required: true
   - type: textarea
     id: location
@@ -19,8 +19,8 @@ body:
       description: >
         Please provide the location of the documentation, e.g. ``gaps.config.load_config`` or the
         URL of the documentation, e.g.
-        "https://nrel.github.io/gaps/_autosummary/gaps.config.load_config.html#gaps.config.load_config"
-      placeholder: https://nrel.github.io/gaps/_autosummary/gaps.config.load_config.html#gaps.config.load_config
+        "https://natlabrockies.github.io/gaps/_autosummary/gaps.config.load_config.html#gaps.config.load_config"
+      placeholder: https://natlabrockies.github.io/gaps/_autosummary/gaps.config.load_config.html#gaps.config.load_config
     validations:
       required: true
   - type: textarea

.github/ISSUE_TEMPLATE/feature_request.yaml

@@ -59,4 +59,4 @@ body:
     attributes:
       label: Charge code
       placeholder: >
-        If you are at NREL and implementing this feature is urgent, please provide a charge code
+        If you are at NLR and implementing this feature is urgent, please provide a charge code

.github/ISSUE_TEMPLATE/installation_issue.yaml

@@ -8,7 +8,7 @@ body:
       label: Installation check
       options:
         - label: >
-            I have read the [installation guide](https://nrel.github.io/gaps/misc/installation.html).
+            I have read the [installation guide](https://natlabrockies.github.io/gaps/misc/installation.html).
           required: true
   - type: input
     id: platform

.github/workflows/apptainer-build-deploy.yml

@@ -31,7 +31,7 @@ jobs:
     steps:
 
       - name: Check out code for the container builds
-        uses: actions/checkout@v6
+        uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2
 
       - name: Build Container
         run: |

.github/workflows/codecov.yml

@@ -11,7 +11,7 @@ jobs:
     name: Codecov
     runs-on: ubuntu-latest
     steps:
-    - uses: actions/checkout@v6
+    - uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2
       with:
         ref: ${{ github.event.pull_request.head.ref || github.ref }}
         fetch-depth: 1
@@ -31,7 +31,7 @@ jobs:
       uses: codecov/codecov-action@v5
       with:
         token: ${{ secrets.CODECOV_TOKEN }}
-        file: ./coverage.xml
+        files: ./coverage.xml
         flags: unittests
         env_vars: OS,PYTHON
         name: codecov-umbrella

.github/workflows/docs.yml

@@ -14,23 +14,23 @@ jobs:
 
     steps:
       - name: Pull Repo
-        uses: actions/checkout@v6
+        uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2
         with:
           fetch-depth: 0
           fetch-tags: true
 
-      - uses: prefix-dev/setup-pixi@v0.9.3
+      - uses: prefix-dev/setup-pixi@v0.9.4
         with:
-          pixi-version: v0.50.2
+          pixi-version: v0.62.2
           locked: true
           cache: true
           cache-write: ${{ github.ref == 'refs/heads/main' }}
           environments: dev
 
       - name: Build Docs
         run: |
-          pixi reinstall -e dev NREL-gaps
-          pixi run -e dev make-html
+          pixi reinstall -e dev NLR-GAPs
+          pixi run -e dev python-docs
 
       - name: deploy
         uses: peaceiris/actions-gh-pages@v4.0.0

.github/workflows/linter.yml

@@ -12,7 +12,7 @@ jobs:
     name: Lint Code Base with Ruff
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v6
+      - uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2
       - uses: astral-sh/ruff-action@v3
         with:
           version: "latest"

.github/workflows/pixi_tests.yml

@@ -17,18 +17,18 @@ jobs:
 
     steps:
     - name: Checkout Repo
-      uses: actions/checkout@v6
+      uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2
       with:
         fetch-depth: 0
 
-    - uses: prefix-dev/setup-pixi@v0.9.3
+    - uses: prefix-dev/setup-pixi@v0.9.4
       with:
-        pixi-version: v0.50.2
+        pixi-version: v0.62.2
         locked: true
         cache: true
         cache-write: ${{ github.ref == 'refs/heads/main' }}
         environments: dev
 
     - run: |
-        pixi reinstall -e dev NREL-gaps
+        pixi reinstall -e dev NLR-GAPs
         pixi run -e dev tests

.github/workflows/pr_rev_cli_tests.yml

@@ -7,15 +7,15 @@ jobs:
     runs-on: ubuntu-latest
     steps:
     - name: checkout gaps
-      uses: actions/checkout@v6
+      uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2
       with:
         ref: ${{ github.event.pull_request.head.ref }}
         fetch-depth: 1
         path: gaps
     - name: checkout reV
-      uses: actions/checkout@v6
+      uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2
       with:
-        repository: nrel/reV
+        repository: NatLabRockies/reV
         fetch-depth: 1
         path: reV
     - name: Set up Python

.github/workflows/publish_to_pypi.yml

@@ -8,25 +8,29 @@ on:
 jobs:
   deploy:
     name: Build and upload wheels
+    permissions:
+      # IMPORTANT: write permission is mandatory for Trusted Publishing
+      id-token: write
+      contents: read
     runs-on: ubuntu-latest
+    if: startsWith(github.ref, 'refs/tags/v')
 
     steps:
-    - uses: actions/checkout@v6
+    - uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2
       with:
         fetch-depth: 0
+        fetch-tags: true
 
-    - uses: prefix-dev/setup-pixi@v0.9.3
+    - uses: prefix-dev/setup-pixi@v0.9.4
       with:
-        pixi-version: v0.50.2
+        pixi-version: v0.62.2
         locked: true
         cache: true
         cache-write: ${{ github.ref == 'refs/heads/main' }}
         environments: dev
 
-    - name: Build and publish
-      env:
-        TWINE_USERNAME: __token__
-        TWINE_PASSWORD: ${{ secrets.PYPI_TOKEN }}
-      run: |
-          pixi reinstall -e dev NREL-gaps
-          pixi run -e dev upload-wheels
+    - name: Build
+      run: pixi run -e dev build-wheels
+
+    - name: Publish package distributions to PyPI
+      uses: pypa/gh-action-pypi-publish@release/v1

.github/workflows/super_linter.yml

@@ -20,7 +20,7 @@ jobs:
 
     steps:
       - name: Checkout Code
-        uses: actions/checkout@v6
+        uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2
         with:
             # super-linter needs the full git history to get the
             # list of files that changed across commits

.github/workflows/tests_tox.yml

@@ -19,7 +19,7 @@ jobs:
         python-version: ['3.13', '3.12', '3.11', '3.10', '3.9']
 
     steps:
-    - uses: actions/checkout@v6
+    - uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2
       with:
         fetch-depth: 0
 
@@ -64,7 +64,7 @@ jobs:
         os: [ubuntu-latest, macos-latest]
 
     steps:
-    - uses: actions/checkout@v6
+    - uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2
       with:
         fetch-depth: 0
 

.github/workflows/wildows_pytests.yml

@@ -11,7 +11,7 @@ jobs:
         python-version: ['3.10', 3.11, 3.12, 3.13]
 
     steps:
-    - uses: actions/checkout@v6
+    - uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2
       with:
         ref: ${{ github.event.pull_request.head.ref }}
         fetch-depth: 1

Apptainer

@@ -3,16 +3,16 @@ From: python:3.11
 
 %labels
     Author Paul Pinchuk
-    Maintainer  ppinchuk@nrel.gov
-    URL https://github.com/NREL/gaps
+    Maintainer  ppinchuk@nlr.gov
+    URL https://github.com/NatLabRockies/gaps
 
 %post
     echo "Installing vim"
     apt-get update && apt-get -y upgrade
     apt-get -y --allow-unauthenticated install vim git wget nano make
 
     echo "Downloading GAPs"
-    git clone https://github.com/NREL/gaps.git
+    git clone https://github.com/NatLabRockies/gaps.git
 
     echo "Installing GAPs..."
     cd gaps

INSTALL.rst

@@ -7,11 +7,11 @@ Installing from PyPI
 ~~~~~~~~~~~~~~~~~~~~
 
 GAPs can be installed via pip from
-`PyPI <https://pypi.org/project/NREL-gaps>`__.
+`PyPI <https://pypi.org/project/NLR-gaps>`__.
 
 .. code-block:: shell
 
-    pip install nrel-gaps
+    pip install nlr-gaps
 
 .. note::
     You must have ``pip>=19.3`` to install from PyPI.
@@ -51,8 +51,8 @@ or `miniconda <https://www.anaconda.com/docs/getting-started/miniconda/main>`__
 package/environment manager.
 
 1. Clone the `gaps` repository.
-    - Using ssh: :code:`git clone git@github.com:NREL/gaps.git`
-    - Using https: :code:`git clone https://github.com/NREL/gaps.git`
+    - Using ssh: :code:`git clone git@github.com:NatLabRockies/gaps.git`
+    - Using https: :code:`git clone https://github.com/NatLabRockies/gaps.git`
 
 2. Create and activate  the ``gaps`` environment and install the package:
     1) Create a conda env: ``conda create -n gaps python=3.13``

LICENSE

@@ -1,6 +1,6 @@
 BSD 3-Clause License
 
-Copyright (c) 2023, Alliance for Sustainable Energy, LLC
+Copyright (c) 2026, Alliance for Energy Innovation, LLC
 
 Redistribution and use in source and binary forms, with or without
 modification, are permitted provided that the following conditions are met:

README.rst

@@ -6,23 +6,23 @@ Welcome to Geospatial Analysis Pipelines (GAPs)!
 |PyPi| |PythonV| |Ruff| |Pixi|
 |License| |SWR|
 
-.. |Docs| image:: https://github.com/NREL/gaps/workflows/Documentation/badge.svg
-    :target: https://nrel.github.io/gaps/
+.. |Docs| image:: https://github.com/NatLabRockies/gaps/workflows/Documentation/badge.svg
+    :target: https://natlabrockies.github.io/gaps/
 
-.. |Tests| image:: https://github.com/NREL/gaps/workflows/Pytests/badge.svg
-    :target: https://github.com/NREL/gaps/actions?query=workflow%3A%22Pytests%22
+.. |Tests| image:: https://github.com/NatLabRockies/gaps/workflows/Pytests/badge.svg
+    :target: https://github.com/NatLabRockies/gaps/actions?query=workflow%3A%22Pytests%22
 
-.. |Linter| image:: https://github.com/NREL/gaps/workflows/Lint%20Code%20Base/badge.svg
-    :target: https://github.com/NREL/gaps/actions?query=workflow%3A%22Lint+Code+Base%22
+.. |Linter| image:: https://github.com/NatLabRockies/gaps/workflows/Lint%20Code%20Base/badge.svg
+    :target: https://github.com/NatLabRockies/gaps/actions?query=workflow%3A%22Lint+Code+Base%22
 
-.. |PyPi| image:: https://img.shields.io/pypi/pyversions/NREL-gaps.svg
-    :target: https://pypi.org/project/NREL-gaps/
+.. |PyPi| image:: https://img.shields.io/pypi/pyversions/NLR-GAPs.svg
+    :target: https://pypi.org/project/NLR-GAPs/
 
-.. |PythonV| image:: https://badge.fury.io/py/NREL-gaps.svg
-    :target: https://badge.fury.io/py/NREL-gaps
+.. |PythonV| image:: https://badge.fury.io/py/NLR-GAPs.svg
+    :target: https://badge.fury.io/py/NLR-GAPs
 
-.. |Codecov| image:: https://codecov.io/gh/NREL/gaps/branch/main/graph/badge.svg?token=6VZK0Q2QNQ
-    :target: https://codecov.io/gh/NREL/gaps
+.. |Codecov| image:: https://codecov.io/gh/NatLabRockies/gaps/branch/main/graph/badge.svg?token=6VZK0Q2QNQ
+    :target: https://codecov.io/gh/NatLabRockies/gaps
 
 .. |Ruff| image:: https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/astral-sh/ruff/main/assets/badge/v2.json
     :target: https://github.com/astral-sh/ruff
@@ -33,15 +33,15 @@ Welcome to Geospatial Analysis Pipelines (GAPs)!
 .. |Pixi| image:: https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/prefix-dev/pixi/main/assets/badge/v0.json
     :target: https://pixi.sh
 
-.. |SWR| image:: https://img.shields.io/badge/SWR--23--28_-blue?label=NREL
+.. |SWR| image:: https://img.shields.io/badge/SWR--23--28_-blue?label=NLR
     :alt: Static Badge
 
 .. inclusion-intro
 
 Geospatial Analysis Pipelines (GAPs) is a framework designed
 to assist researchers and software developers add execution
 tools to their geospatial python models. Born from the
-open-source `reV <https://github.com/NREL/reV>`_ model, GAPs is a
+open-source `reV <https://github.com/NatLabRockies/reV>`_ model, GAPs is a
 robust and easy-to-use engine that provides a rich set of features
 such as command-line interface (CLI) generation and documentation,
 basic High-Performance Computing (HPC) scaling capabilities,
@@ -57,19 +57,19 @@ use GAPs to add a variety of utility for end-users, including a complete
 set of CLI commands and documentation pulled from the model run function
 docstrings. In addition, GAPs provides basic HPC execution capabilities,
 particularly catered towards embarrassingly parallel geospatial models
-(e.g. single-location models such as the `System Advisor Model <https://sam.nrel.gov>`_).
+(e.g. single-location models such as the `System Advisor Model <https://sam.nlr.gov>`_).
 GAPs can automatically distribute the execution of such models over a large
 geospatial extent (e.g. CONUS) across many parallel HPC nodes.
 
 GAPs is **NOT** a workflow management system (WMS), and therefore does not
 provide any of the in-depth tools/capabilities expected from a proper WMS.
 However, GAPs-supported models can sometimes be included as part of the workflow in
-WMS tools like `Torc <https://pages.github.nrel.gov/viz/wms/index.html#/>`_.
+WMS tools like `Torc <https://pages.github.natlabrockies.gov/viz/wms/index.html#/>`_.
 
 To get started, take a look at the examples for
-`analysts <https://nrel.github.io/gaps/misc/examples.users.html>`_ or
-`model developers <https://nrel.github.io/gaps/misc/examples.developers.html>`_
-or dive straight into the full `documentation <https://nrel.github.io/gaps/>`_.
+`analysts <https://natlabrockies.github.io/gaps/misc/examples.users.html>`_ or
+`model developers <https://natlabrockies.github.io/gaps/misc/examples.developers.html>`_
+or dive straight into the full `documentation <https://natlabrockies.github.io/gaps/>`_.
 
 
 Installing GAPs
@@ -79,19 +79,19 @@ The quickest way to install GAPs for users is from PyPi:
 
 .. code-block:: shell
 
-    pip install nrel-gaps
+    pip install nlr-gaps
 
 If you are a developer contributing to GAPs, we recommend using `pixi <https://pixi.sh/latest/>`_:
 
 .. code-block:: shell
 
     pixi shell
 
-For detailed instructions, see the `installation documentation <https://nrel.github.io/gaps/misc/installation.html>`_.
+For detailed instructions, see the `installation documentation <https://natlabrockies.github.io/gaps/misc/installation.html>`_.
 
 Development
 ===========
-Please see the `Development Guidelines <https://nrel.github.io/gaps/dev/index.html>`_
+Please see the `Development Guidelines <https://natlabrockies.github.io/gaps/dev/index.html>`_
 if you wish to contribute code to this repository.