removed logger.exception

NeoMedSys · Jul 31, 2023 · 71f48df · 71f48df
1 parent 4e0a69e
commit 71f48df
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Showing 3 changed files with 10 additions and 10 deletions.
diff --git a/central_processing.py b/central_processing.py
@@ -73,10 +73,10 @@ def preprocess(
             return data
         except (NameError, ValueError, TypeError, AttributeError, RuntimeError) as e:
             msg = f'I failed preprocessing the image with error: {e}'
-            logger.exception(msg)
+            logger.error(msg)
         except Exception as e:
             msg = f'I failed preprocessing the image. Unexpected exception: type={type(e)}, e:{e}'
-            logger.exception(msg)
+            logger.error(msg)
 
     @timer
     def predict_step(self, data: np.ndarray, model: config.ModelInput) -> np.ndarray:
@@ -112,10 +112,10 @@ def predict_step(self, data: np.ndarray, model: config.ModelInput) -> np.ndarray
             RuntimeError,
         ) as e:
             msg = f'I failed predicting the image with error: {e}'
-            logger.exception(msg)
+            logger.error(msg)
         except Exception as e:
             msg = f'I failed predicting the image. Unexpected exception: type={type(e)}, e:{e}'
-            logger.exception(msg)
+            logger.error(msg)
 
     @timer
     def postprocess(
@@ -159,7 +159,7 @@ def postprocess(
             RuntimeError,
         ) as e:
             msg = f'I failed postprocessing with error {e}'
-            logger.exception(msg)
+            logger.error(msg)
         except Exception as e:
             msg = f'I failed postprocessing the image. Unexpected exception: type={type(e)}, e:{e}'
-            logger.exception(msg)
+            logger.error(msg)
diff --git a/data_download.py b/data_download.py
@@ -75,7 +75,7 @@ def download_data(
                         f.create_dataset(key, data=value)
 
         except ValueError:
-            logger.exception('Error while downloading data from MedQuery')
+            logger.error('Error while downloading data from MedQuery')
 
     def hdf5_to_nifti_all(self, hdf5_path: str, output_dir: str) -> NoReturn:
         """Convert hdf5 file to nifti file.
@@ -110,7 +110,7 @@ def hdf5_to_nifti_all(self, hdf5_path: str, output_dir: str) -> NoReturn:
                     img = nib.Nifti1Image(data, affine)
                     nib.save(img, os.path.join(output_dir, f'{series_uid}.nii.gz'))
         except IndexError:
-            logger.exception('Error with hdf5 indexing')
+            logger.error('Error with hdf5 indexing')
 
     def hdf5_to_nifti_single(
         self, hdf5_path: str, output_dir: str, series_uid: str

diff --git a/neotemplate/base_central_processing.py b/neotemplate/base_central_processing.py
@@ -143,7 +143,7 @@ def preprocess(self, data: np.ndarray, extras: Optional[Dict[str, Any]] = {}) ->
         try:
             raise NotImplementedError
         except Exception:
-            logger.exception('preproccessing failed')
+            logger.error('preproccessing failed')
 
     def predict_step(self, data: np.ndarray) -> np.ndarray:
         """
@@ -163,7 +163,7 @@ def predict_step(self, data: np.ndarray) -> np.ndarray:
         try:
             raise NotImplementedError
         except Exception:
-            logger.exception('predict_step failed')
+            logger.error('predict_step failed')
 
     def check_version(self):
         try: