v2.0.5 implements bug fixes from v2.0.0
- fix glyco crash if localization not run in MSFragger
- prevent crash if unknown glycans in database
- add support for additional glycan database types
other changes:
- Upgrade batmass-io to 1.28.5
- Added output list of glycans for IonQuant
- Add charge state column to global.diagmine.tsv
- Change in output structure
This release includes two files.
ptmshepherd-2.0.5.jar does not include dependencies and can only be run within FragPipe
ptmshepherd-2.0.5_CLI.jar includes dependencies and can be run as a standalone Java program from the command line.