NEUBIAS-WG5 workflow for nuclei segmentation using Mask R-CNN. The workflow uses Matterport Mask R-CNN (https://github.com/matterport/Mask_RCNN) Keras implementation. The model was trained with Kaggle 2018 Data Science Bowl (https://www.kaggle.com/c/data-science-bowl-2018) images.
The used Mask R-CNN model (mask_rcnn_presegmentation.h5) is described in the preprint "A deep learning framework for nucleus segmentation using style transfer" (https://doi.org/10.1101/580605).