Nuclei segmentation in 3D images using 3D Gaussian blur (user defined radius) + Thresholding (user defined) + 3 holes filling + 3D watershed.
This workflow is described in www.biii.eu in http://biii.eu/nuclei-segmentation-3d-imagej
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BIAFLOWS workflow to segment clustered nuclei using a 3D filter, thresholding and a 3D binary watershed.
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