python3Packages.biosppy: init at 2.2.2

python3Packages.neurokit2: add changelog python3Packages.biosppy: change build-system to dependencies and add changelog
NixOS · Jan 7, 2025 · 16d3360 · 16d3360
1 parent 8a1c356
commit 16d3360
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Showing 3 changed files with 75 additions and 7 deletions.
diff --git a/pkgs/development/python-modules/biosppy/default.nix b/pkgs/development/python-modules/biosppy/default.nix
@@ -0,0 +1,58 @@
+{
+  lib,
+  fetchFromGitHub,
+  buildPythonPackage,
+  bidict,
+  h5py,
+  matplotlib,
+  numpy,
+  scikit-learn,
+  scipy,
+  shortuuid,
+  six,
+  joblib,
+  pywavelets,
+  mock,
+}:
+
+buildPythonPackage rec {
+  pname = "biosppy";
+  version = "2.2.2";
+
+  src = fetchFromGitHub {
+    owner = "scientisst";
+    repo = "BioSPPy";
+    tag = "v${version}";
+    hash = "sha256-U0ZftAlRlazSO66raH74o/6eP1RpmuFoA6HJ+xmgKR8=";
+  };
+
+  dependencies = [
+    bidict
+    h5py
+    matplotlib
+    numpy
+    scikit-learn
+    scipy
+    shortuuid
+    six
+    joblib
+    pywavelets
+  ];
+
+  nativeCheckInputs = [
+    mock
+  ];
+
+  pythonImportsCheck = [
+    "biosppy"
+  ];
+
+  meta = {
+    description = "Biosignal Processing in Python";
+    homepage = "https://github.com/scientisst/BioSPPy";
+    changelog = "https://github.com/scientisst/BioSPPy/releases/tag/v${version}";
+    license = lib.licenses.bsd3;
+    maintainers = with lib.maintainers; [ genga898 ];
+    mainProgram = "biosppy";
+  };
+}
diff --git a/pkgs/development/python-modules/neurokit2/default.nix b/pkgs/development/python-modules/neurokit2/default.nix
@@ -1,8 +1,17 @@
 {
   lib,
   fetchFromGitHub,
-  python3Packages,
   buildPythonPackage,
+  setuptools,
+  wheel,
+  pytest_7,
+  scipy,
+  scikit-learn,
+  pandas,
+  matplotlib,
+  requests,
+  cvxopt,
+  biosppy,
 }:
 
 buildPythonPackage rec {
@@ -22,33 +31,32 @@ buildPythonPackage rec {
       --replace-fail '"pytest-runner"' '"pytest"'
   '';
 
-  build-system = with python3Packages; [
+  build-system = [
     setuptools
     wheel
     pytest_7
   ];
 
-  dependencies = with python3Packages; [
+  dependencies = [
     scipy
     scikit-learn
     pandas
     matplotlib
     requests
     cvxopt
     biosppy
-
-    # Test Dependencies
-    pytest-cov
-    mock
   ];
 
+  # Skipped tests cause they get stuck after the fifth one
+
   pythonImportsCheck = [
     "neurokit2"
   ];
 
   meta = {
     description = "Python Toolbox for Neurophysiological Signal Processing";
     homepage = "https://github.com/neuropsychology/NeuroKit";
+    changelog = "https://github.com/neuropsychology/NeuroKit/releases/tag/v${version}";
     license = lib.licenses.mit;
     maintainers = with lib.maintainers; [ genga898 ];
     mainProgram = "neurokit2";

diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
@@ -1677,6 +1677,8 @@ self: super: with self; {
 
   biopython = callPackage ../development/python-modules/biopython { };
 
+  biosppy = callPackage ../development/python-modules/biosppy { };
+
   biothings-client = callPackage ../development/python-modules/biothings-client { };
 
   biplist = callPackage ../development/python-modules/biplist { };