splitcode: init at 0.30.0

pkgs/by-name/sp/splitcode/add-stdint.patch

@@ -0,0 +1,12 @@
+diff --git a/src/SplitCode.h b/src/SplitCode.h
+index 45c199c..fb05250 100644
+--- a/src/SplitCode.h
++++ b/src/SplitCode.h
+@@ -18,6 +18,7 @@
+ #include <stack>
+ #include <cmath>
+ #include <iomanip>
++#include <cstdint>
+
+ #if defined(_MSVC_LANG)
+ #define SPLITCODE_CPP_VERSION _MSVC_LANG

pkgs/by-name/sp/splitcode/package.nix

@@ -0,0 +1,47 @@
+{
+  lib,
+  stdenv,
+  fetchFromGitHub,
+  cmake,
+  libcxx,
+  zlib,
+}:
+let
+  version = "0.30.0";
+in
+stdenv.mkDerivation {
+  pname = "splitcode";
+  inherit version;
+
+  src = fetchFromGitHub {
+    owner = "pachterlab";
+    repo = "splitcode";
+    rev = "v${version}";
+    hash = "sha256-g38pJFP9uA2P5ktogAPXKgPtsEJn5vtnK5HClqqezmg=";
+  };
+
+  patches = [ ./add-stdint.patch ];
+
+  nativeBuildInputs = [ cmake ];
+
+  buildInputs = [
+    libcxx
+    zlib
+  ];
+
+  doCheck = true;
+  checkPhase = ''
+    mkdir func_tests
+    cp $src/func_tests/* ./func_tests/
+    bash ./func_tests/runtests.sh
+  '';
+
+  meta = {
+    description = "Tool for flexible, efficient parsing, interpreting, and editing of technical sequences in sequencing reads";
+    homepage = "https://github.com/pachterlab/splitcode";
+    license = lib.licenses.bsd2;
+    platforms = lib.platforms.all;
+    maintainers = with lib.maintainers; [ zimward ];
+    mainProgram = "splitcode";
+  };
+}