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@Noble-Lab

Noble Lab Department of Genome Sciences UW

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  1. casanovo casanovo Public

    De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model

    Python 105 37

  2. crema crema Public

    Confidence Estimation for Mass Spectrometry Proteomics

    Python 12 1

  3. Pepper Pepper Public

    Peptide coefficient predictor

    Jupyter Notebook 9 2

  4. 2023-prot-impute-benchmark 2023-prot-impute-benchmark Public

    The GitHub repository accompanying our 2023 quantitative proteomics imputation methods benchmarking study

    Jupyter Notebook 8

  5. Polarbear Polarbear Public

    Polarbear translates between different single-cell data modalities

    Python 7 2

  6. cascadia cascadia Public

    Transformer deep learning model for de novo sequencing of data-independent acquisition mass spectrometry data

    Python 6 3

Repositories

Showing 10 of 33 repositories
  • casanovo Public

    De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model

    Noble-Lab/casanovo’s past year of commit activity
    Python 105 Apache-2.0 37 29 (1 issue needs help) 9 Updated Oct 14, 2024
  • Noble-Lab/multi-species-benchmark’s past year of commit activity
    Python 0 0 0 0 Updated Oct 2, 2024
  • twinc Public

    TwinC: Twin CNN model for 3D genome folding

    Noble-Lab/twinc’s past year of commit activity
    Python 2 Apache-2.0 0 0 0 Updated Sep 25, 2024
  • 2024_proteomics_impute Public

    Code used to generate figures in our 2024 manuscript on mass spectrometry proteomics imputation

    Noble-Lab/2024_proteomics_impute’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Sep 12, 2024
  • CellCycleNet Public

    Predicting cell cycle stage from 3D single-cell nuclear-stained images

    Noble-Lab/CellCycleNet’s past year of commit activity
    Python 4 MIT 0 0 0 Updated Sep 9, 2024
  • lupine Public

    Mass spectrometry proteomics imputation with a multilayer perceptron

    Noble-Lab/lupine’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Sep 6, 2024
  • Sunbear Public

    single cell multimodal/multicondition temporal model

    Noble-Lab/Sunbear’s past year of commit activity
    Python 1 0 0 0 Updated Aug 27, 2024
  • Icebear Public
    Noble-Lab/Icebear’s past year of commit activity
    Python 2 Apache-2.0 0 0 0 Updated Aug 27, 2024
  • trans-C Public

    Identifying sets of loci that interact strongly in trans

    Noble-Lab/trans-C’s past year of commit activity
    Python 3 MIT 0 0 0 Updated Aug 26, 2024
  • cascadia Public

    Transformer deep learning model for de novo sequencing of data-independent acquisition mass spectrometry data

    Noble-Lab/cascadia’s past year of commit activity
    Python 6 Apache-2.0 3 1 0 Updated Aug 6, 2024

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