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Version TinkerTool 0.3.1 #18

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@Ovewh Ovewh commented Jan 27, 2026

This is major update to Tinkertool.

  • The changes made in general noresm version is brought into the main version of tinkertool.
  • One at the time test functionality is added
  • New method for perturbing parameters using f-strings.
  • generate-paramfile have been simplified, compared to the general noresm version.
  • usermods is now used to highlight scripts that have been developed for different ppe.

Johannesfjeldsaa and others added 30 commits May 26, 2025 15:24
@Johannesfjeldsaa
Introduce logging. More flexible passing of kwargs to clone_base_case…
dfe27c7 
…. Introduce env_pe and env_build as optional entries in simulation_setup. Introduce componentdict passing to clone_base_case to send correct parameter to correct component.
@Johannesfjeldsaa
WIP pyproject.toml and README
d72123e
@Johannesfjeldsaa
CLI for individual steps building, and submitting introduced
1cadbe4
@Johannesfjeldsaa
warning if there is a disconect beteween exported CESMROOT and the on…
e73eef6 
…e used in the initialisation files
@Johannesfjeldsaa
change from run_command wrapper of subprocess to subprocess.run comma…
fc7e346 
…nd directly for more transparency in code
@Johannesfjeldsaa
add functions for checking build of the ensemble based on CaseStatus …
f94fb67 
…file and routine for prestaging restart files if one is running hybrid or branch runs
@Johannesfjeldsaa
improved create_ppe function with inclusion of build check and presta…
4971631 
…ging of restart files.
@Johannesfjeldsaa
improved create_ppe function with inclusion of build check and presta…
6f6a765 
…ging of restart files.
@Johannesfjeldsaa
move generate paramfile function to new config system
7a39e6d
@Johannesfjeldsaa
remove utility functions
31bd4db
@Johannesfjeldsaa
do not track .history file that vscode creates
4ce229b
@maritsandstad
Initial commit skeleton
5ec76e5
@Johannesfjeldsaa
remove pylance errors and improve documentation
c759982
@Johannesfjeldsaa
.
32dcbdc
@Johannesfjeldsaa
check of CESMROOT definition
aeb003b
@Johannesfjeldsaa
fix name of cases
cb19b59
@Johannesfjeldsaa
minor refactoring + splitting the job wallclock time
aaa4d53
@Johannesfjeldsaa
start of framework to do build, check_build, prestage_ensamble, submi…
71fd8db 
…t_ppe using CLI
@Johannesfjeldsaa
change of returntype
c431402
@Johannesfjeldsaa
change of returntype
c77aa58
@Johannesfjeldsaa
fix errors from custom detail level in logging
5065110
@Johannesfjeldsaa
some template files for upcomming examples in documentation
28068dd
@Johannesfjeldsaa
some updates to readme
6fa4df7
@Johannesfjeldsaa
Merge pull request #1 from Johannesfjeldsaa/refactor_config
c1469a4 
Refactor config
@maritsandstad
Working skeleton
05f24f0
@maritsandstad
Tiny sprinkling of docs, can change this to whatever more decent form…
8c5ecfa 
…at you want as needed / wanted
@Johannesfjeldsaa
package wide awearness of location on machine
f0a1156
@Johannesfjeldsaa
plotting extras introduced
02d458c
@Johannesfjeldsaa
plotting extras introduced
273d7be
@Johannesfjeldsaa
start on input_type attribute system for the parameter file creation
7a95143
Ovewh added 30 commits December 3, 2025 22:27
@Ovewh
remove print statuement
39e6a4a
@Ovewh
Merge branch 'feature/add_testing' into feature/one-at-the-time-v2
02311f4
@Ovewh
move fixture to own config file
a532cc5
@Ovewh
update dev dependencies and add testing for parameter file cration
83cc649
@Ovewh
make generate_paramfile available on the top level
0af5b30
@Ovewh
add testing for oat
9b84975
@Ovewh
Reorder repo, rather than "PPE input file templates" group info accor…
23811b3 
…ding to user_mods
@Ovewh
move aerosol ppe specific script under its respective usermod
068aea0
@Ovewh
fix aerosol-ppe-specific code
682c84a
@Ovewh
add testing of perturbing parameters via chem_mech changes
1a122cf
@Ovewh
Merge branch 'main' into feature/one-at-the-time-v2
fd65eab
@Ovewh
Refactor pyproject.toml to align with PEP 508 standards and update pr…
b941903 
…oject metadata

- Changed from [tool.poetry] to [project] for project configuration.
- Updated authors section to use the new format with name and email.
- Specified Python version requirements under requires-python.
- Reorganized dependencies into a list format and defined optional dependencies.
- Added project scripts section for CLI commands.
- Updated build-system requirements to specify poetry-core version.
- Removed deprecated sections and adjusted dependency specifications.
@Ovewh
update settings aerosol ppe
0cfa7ef
@Ovewh
make it possible to use enviroment variables within .ini files
a63e5d0
@Ovewh
add testing for CLI of parameter file generation
23ba61a
@Ovewh
refactor error handling in validation functions to raise ValueError i…
2b82d05 
…nstead of SystemExit
@Ovewh
update aerosol ppe usecase
fe61291
@Ovewh
clean up old print statements
6414fc3
@Ovewh
fix terrible way of obtaining component name
c0a4f3d
@Ovewh
fix for multiline diag put into the misc section
a2dddf5
@Ovewh
update aerosol ppe config
84f7382
@Ovewh
move away from the standard netCDF python libaray to xarray
a89816e 
- Removed paramdict, this can better be represented with xarray dataset and attrs.
@Ovewh
add f strings as a second options for manipulating usr_nl files
b7ce15a
@Ovewh
add new parameters, and changes to emission path to allow for emissio…
1d5db74 
…n scalings
@Ovewh
add checking script for oat simulation
25d506b
@Ovewh
rename "ROOT" logger into CIME logger which is more understandable
51879f1
@Ovewh
make it possible to overview base_case independently of the ppe ensem…
f244819 
…ble and vice versa

The also renamed existing kwargs to better reflect their actual finction
@Ovewh
fix issue with the "f-string" method for including parameter perturba…
da1b8f9 
…tion.

When using fstring to perturb parameters you need to recreate the user_nl file for each ensemble and not copy and append from basecase!
@Ovewh
updates with respect to the aerosol-ppe
4e9dc95
@Ovewh
fix bug with parameters not being written to the namelist file
55143f5
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4 participants

@Ovewh @Johannesfjeldsaa @maritsandstad @hermanfugl