Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Develop #91

Merged
merged 61 commits into from
Aug 14, 2024
Merged

Develop #91

merged 61 commits into from
Aug 14, 2024

Commits on May 26, 2024

  1. fix: optomize dataloading for ambient profile

    @CaibinSh
    CaibinSh committed May 26, 2024
    Configuration menu
    Copy the full SHA
    8b77310 View commit details
    Browse the repository at this point in the history

  2. fix: optomize dataloading for ambient profile

    @CaibinSh
    CaibinSh committed May 26, 2024
    Configuration menu
    Copy the full SHA
    3896417 View commit details
    Browse the repository at this point in the history

  3. docs: update installation

    @CaibinSh
    CaibinSh committed May 26, 2024
    Configuration menu
    Copy the full SHA
    3a0058d View commit details
    Browse the repository at this point in the history

  4. feat: add functionality for batch ambient removal

    @CaibinSh
    CaibinSh committed May 26, 2024
    Configuration menu
    Copy the full SHA
    5bc0d84 View commit details
    Browse the repository at this point in the history

  5. feat: add functionality for batch ambient removal

    @CaibinSh
    CaibinSh committed May 26, 2024
    Configuration menu
    Copy the full SHA
    353059f View commit details
    Browse the repository at this point in the history

  6. fix: fix a bug and refactor dataloading

    @CaibinSh
    CaibinSh committed May 26, 2024
    Configuration menu
    Copy the full SHA
    5066899 View commit details
    Browse the repository at this point in the history

  7. fix: fix a bug

    @CaibinSh
    CaibinSh committed May 26, 2024
    Configuration menu
    Copy the full SHA
    e5ebaf8 View commit details
    Browse the repository at this point in the history

  8. fix: fix a bug

    @CaibinSh
    CaibinSh committed May 26, 2024
    Configuration menu
    Copy the full SHA
    d6c1663 View commit details
    Browse the repository at this point in the history

  9. fix: fix a bug

    @CaibinSh
    CaibinSh committed May 26, 2024
    Configuration menu
    Copy the full SHA
    24e1f95 View commit details
    Browse the repository at this point in the history

  10. fix: fix a bug

    @CaibinSh
    CaibinSh committed May 26, 2024
    Configuration menu
    Copy the full SHA
    db17c87 View commit details
    Browse the repository at this point in the history

Commits on May 28, 2024

  1. refactor: refactor scar dataloader

    @CaibinSh
    CaibinSh committed May 28, 2024
    Configuration menu
    Copy the full SHA
    7bb5d9a View commit details
    Browse the repository at this point in the history

  2. refactor: refactor codes for better GPU usage

    @CaibinSh
    CaibinSh committed May 28, 2024
    Configuration menu
    Copy the full SHA
    535326f View commit details
    Browse the repository at this point in the history

  3. refactor: refactor codes for better GPU usage

    @CaibinSh
    CaibinSh committed May 28, 2024
    Configuration menu
    Copy the full SHA
    73f737c View commit details
    Browse the repository at this point in the history

Commits on Jul 24, 2024

  1. refactor: Refactor functions for compatibility with scipy 1.14

    @CaibinSh
    CaibinSh committed Jul 24, 2024
    Configuration menu
    Copy the full SHA
    7ada773 View commit details
    Browse the repository at this point in the history

Commits on Jul 25, 2024

  1. refactor: load entire data to GPU

    @CaibinSh
    CaibinSh committed Jul 25, 2024
    Configuration menu
    Copy the full SHA
    cab3872 View commit details
    Browse the repository at this point in the history

Commits on Jul 27, 2024

  1. refactor(scar): refactor dataloading to improve efficiency

    @CaibinSh
    CaibinSh committed Jul 27, 2024
    Configuration menu
    Copy the full SHA
    c4901cd View commit details
    Browse the repository at this point in the history

  2. refactor(scar): refactor dataloading to improve efficiency

    @CaibinSh
    CaibinSh committed Jul 27, 2024
    Configuration menu
    Copy the full SHA
    cbf222b View commit details
    Browse the repository at this point in the history

  3. refactor(scar): refactor dataloading to improve efficiency

    @CaibinSh
    CaibinSh committed Jul 27, 2024
    Configuration menu
    Copy the full SHA
    99665da View commit details
    Browse the repository at this point in the history

  4. refactor(scar): refactor dataloading to improve efficiency

    @CaibinSh
    CaibinSh committed Jul 27, 2024
    Configuration menu
    Copy the full SHA
    707a0e0 View commit details
    Browse the repository at this point in the history

  5. feature(scar): introduce caching functionality

    @CaibinSh
    CaibinSh committed Jul 27, 2024
    Configuration menu
    Copy the full SHA
    3f07c35 View commit details
    Browse the repository at this point in the history

Commits on Jul 28, 2024

  1. doc(docs): update python version for readthedocs

    @CaibinSh
    CaibinSh committed Jul 28, 2024
    Configuration menu
    Copy the full SHA
    7d85da3 View commit details
    Browse the repository at this point in the history

  2. doc(docs): update sphinx-gallery version for readthedocs

    @CaibinSh
    CaibinSh committed Jul 28, 2024
    Configuration menu
    Copy the full SHA
    7d436e4 View commit details
    Browse the repository at this point in the history

  3. refactor(scar): delete unneccessary codes

    @CaibinSh
    CaibinSh committed Jul 28, 2024
    Configuration menu
    Copy the full SHA
    6b101f1 View commit details
    Browse the repository at this point in the history

Commits on Jul 29, 2024

  1. refactor(scar): refactor scar to allow efficient usage of GPU

    @CaibinSh
    CaibinSh committed Jul 29, 2024
    Configuration menu
    Copy the full SHA
    c846d9b View commit details
    Browse the repository at this point in the history

  2. refactor(scar): refactor scar to allow efficient usage of GPU

    @CaibinSh
    CaibinSh committed Jul 29, 2024
    Configuration menu
    Copy the full SHA
    4c808ab View commit details
    Browse the repository at this point in the history

  3. refactor(scar): refactor scar to allow efficient usage of GPU

    @CaibinSh
    CaibinSh committed Jul 29, 2024
    Configuration menu
    Copy the full SHA
    5eb2ebb View commit details
    Browse the repository at this point in the history

  4. refactor(scar): refactor scar to allow efficient usage of GPU

    @CaibinSh
    CaibinSh committed Jul 29, 2024
    Configuration menu
    Copy the full SHA
    6529b97 View commit details
    Browse the repository at this point in the history

Commits on Aug 7, 2024

  1. refactor(scar): not output native frequencies by default

    @CaibinSh
    CaibinSh committed Aug 7, 2024
    Configuration menu
    Copy the full SHA
    4ba263a View commit details
    Browse the repository at this point in the history

Commits on Aug 8, 2024

  1. refactor(scar): refactor dataloader

    @CaibinSh
    CaibinSh committed Aug 8, 2024
    Configuration menu
    Copy the full SHA
    4930798 View commit details
    Browse the repository at this point in the history

  2. refactor(scar): remove redundant codes

    @CaibinSh
    CaibinSh committed Aug 8, 2024
    Configuration menu
    Copy the full SHA
    51a85e7 View commit details
    Browse the repository at this point in the history

  3. refactor(scar): optimize dataloading

    @CaibinSh
    CaibinSh committed Aug 8, 2024
    Configuration menu
    Copy the full SHA
    41dd2a2 View commit details
    Browse the repository at this point in the history

  4. refactor(vae): refactor stochastic rounding for performance

    @CaibinSh
    CaibinSh committed Aug 8, 2024
    Configuration menu
    Copy the full SHA
    0af1c99 View commit details
    Browse the repository at this point in the history

Commits on Aug 9, 2024

  1. chore: rewrite device log information

    @CaibinSh
    CaibinSh committed Aug 9, 2024
    Configuration menu
    Copy the full SHA
    08f9e22 View commit details
    Browse the repository at this point in the history

Commits on Aug 10, 2024

  1. docs(scar): correct docs for scar

    @CaibinSh
    CaibinSh committed Aug 10, 2024
    Configuration menu
    Copy the full SHA
    d44f3a3 View commit details
    Browse the repository at this point in the history

  2. docs(tutorials): update tutorial notebooks

    EC2 Default User committed Aug 10, 2024
    Configuration menu
    Copy the full SHA
    06f3d7e View commit details
    Browse the repository at this point in the history

  3. docs(scar): refactor docs

    @CaibinSh
    CaibinSh committed Aug 10, 2024
    Configuration menu
    Copy the full SHA
    78f8f76 View commit details
    Browse the repository at this point in the history

  4. Merge branch 'develop' of https://github.com/Novartis/scar into develop

    @CaibinSh
    CaibinSh committed Aug 10, 2024
    Configuration menu
    Copy the full SHA
    43038ca View commit details
    Browse the repository at this point in the history

Commits on Aug 11, 2024

  1. docs(scar): add docs for cache_capacity parameter

    @CaibinSh
    CaibinSh committed Aug 11, 2024
    Configuration menu
    Copy the full SHA
    2262e34 View commit details
    Browse the repository at this point in the history

  2. refactor(main): refactor command line tool

    @CaibinSh
    CaibinSh committed Aug 11, 2024
    Configuration menu
    Copy the full SHA
    d3d4d1b View commit details
    Browse the repository at this point in the history

  3. refator(scar): refactor scar to automate calculation of ambient profi… 

    …le in the case of no ambient profile provided
    @CaibinSh
    CaibinSh committed Aug 11, 2024
    Configuration menu
    Copy the full SHA
    9ef0272 View commit details
    Browse the repository at this point in the history

  4. fix(main): fix a bug

    @CaibinSh
    CaibinSh committed Aug 11, 2024
    Configuration menu
    Copy the full SHA
    bedfa6e View commit details
    Browse the repository at this point in the history

  5. fix(main): fix a bug

    @CaibinSh
    CaibinSh committed Aug 11, 2024
    Configuration menu
    Copy the full SHA
    1615684 View commit details
    Browse the repository at this point in the history

Commits on Aug 12, 2024

  1. Merge branch 'main' into develop

    @CaibinSh
    CaibinSh committed Aug 12, 2024
    Configuration menu
    Copy the full SHA
    7363753 View commit details
    Browse the repository at this point in the history

  2. fix(test): lower down sample size for test

    @CaibinSh
    CaibinSh committed Aug 12, 2024
    Configuration menu
    Copy the full SHA
    4c86c1b View commit details
    Browse the repository at this point in the history

  3. docs(scar): update version in doc

    @CaibinSh
    CaibinSh committed Aug 12, 2024
    Configuration menu
    Copy the full SHA
    6b00c74 View commit details
    Browse the repository at this point in the history

Commits on Aug 14, 2024

  1. docs(tutorial): update notebooks

    @CaibinSh
    CaibinSh committed Aug 14, 2024
    Configuration menu
    Copy the full SHA
    d581d7c View commit details
    Browse the repository at this point in the history

  2. docs(tutorial): add a tutorial for batch denoising

    @CaibinSh
    CaibinSh committed Aug 14, 2024
    Configuration menu
    Copy the full SHA
    631e4bb View commit details
    Browse the repository at this point in the history

  3. refactor(docs): reset semantic_release to main branch

    @CaibinSh
    CaibinSh committed Aug 14, 2024
    Configuration menu
    Copy the full SHA
    53b839b View commit details
    Browse the repository at this point in the history

  4. docs(tutorial): update hyperlink

    @CaibinSh
    CaibinSh committed Aug 14, 2024
    Configuration menu
    Copy the full SHA
    8a7b448 View commit details
    Browse the repository at this point in the history

  5. Develop (#82) 

    * fix: optomize dataloading for ambient profile

* fix: optomize dataloading for ambient profile

* docs: update installation

* feat: add functionality for batch ambient removal

* feat: add functionality for batch ambient removal

* fix: fix a bug and refactor dataloading

* fix: fix a bug

* fix: fix a bug

* fix: fix a bug

* fix: fix a bug

* refactor: refactor scar dataloader

* refactor: refactor codes for better GPU usage

* refactor: refactor codes for better GPU usage

* refactor: Refactor functions for compatibility with scipy 1.14

* refactor: load entire data to GPU

* refactor(scar): refactor dataloading to improve efficiency

* refactor(scar): refactor dataloading to improve efficiency

* refactor(scar): refactor dataloading to improve efficiency

* refactor(scar): refactor dataloading to improve efficiency

* feature(scar): introduce caching functionality

* doc(docs): update python version for readthedocs

* doc(docs): update sphinx-gallery version for readthedocs

* refactor(scar): delete unneccessary codes

* refactor(scar): refactor scar to allow efficient usage of GPU

* refactor(scar): refactor scar to allow efficient usage of GPU

* refactor(scar): refactor scar to allow efficient usage of GPU

* refactor(scar): refactor scar to allow efficient usage of GPU

* refactor(scar): not output native frequencies by default

* refactor(scar): refactor dataloader

* refactor(scar): remove redundant codes

* refactor(scar): optimize dataloading

* refactor(vae): refactor stochastic rounding for performance

* chore: rewrite device log information

* docs(scar): correct docs for scar

* docs(tutorials): update tutorial notebooks

* docs(scar): refactor docs

* docs(scar): add docs for cache_capacity parameter

* refactor(main): refactor command line tool

* refator(scar): refactor scar to automate calculation of ambient profile in the case of no ambient profile provided

* fix(main): fix a bug

* fix(main): fix a bug

* fix(test): lower down sample size for test

* docs(scar): update version in doc

* docs(tutorial): update notebooks

* docs(tutorial): add a tutorial for batch denoising

* refactor(docs): reset semantic_release to main branch

* docs(tutorial): update hyperlink

---------

Co-authored-by: EC2 Default User <ec2-user@ip-172-16-10-142.us-east-2.compute.internal>
    @CaibinSh
    CaibinSh and EC2 Default User authored Aug 14, 2024
    Configuration menu
    Copy the full SHA
    b0d3e2f View commit details
    Browse the repository at this point in the history

  6. fix(workflow): update semantic release

    @CaibinSh
    CaibinSh committed Aug 14, 2024
    Configuration menu
    Copy the full SHA
    bd64320 View commit details
    Browse the repository at this point in the history

  7. fix(workflow): update semantic release

    @CaibinSh
    CaibinSh committed Aug 14, 2024
    Configuration menu
    Copy the full SHA
    0dbc5d4 View commit details
    Browse the repository at this point in the history

  8. fix(workflow): update semantic release

    @CaibinSh
    CaibinSh committed Aug 14, 2024
    Configuration menu
    Copy the full SHA
    0260953 View commit details
    Browse the repository at this point in the history

  9. update semantic release (#84) 

    * fix: optomize dataloading for ambient profile

* fix: optomize dataloading for ambient profile

* docs: update installation

* feat: add functionality for batch ambient removal

* feat: add functionality for batch ambient removal

* fix: fix a bug and refactor dataloading

* fix: fix a bug

* fix: fix a bug

* fix: fix a bug

* fix: fix a bug

* refactor: refactor scar dataloader

* refactor: refactor codes for better GPU usage

* refactor: refactor codes for better GPU usage

* refactor: Refactor functions for compatibility with scipy 1.14

* refactor: load entire data to GPU

* refactor(scar): refactor dataloading to improve efficiency

* refactor(scar): refactor dataloading to improve efficiency

* refactor(scar): refactor dataloading to improve efficiency

* refactor(scar): refactor dataloading to improve efficiency

* feature(scar): introduce caching functionality

* doc(docs): update python version for readthedocs

* doc(docs): update sphinx-gallery version for readthedocs

* refactor(scar): delete unneccessary codes

* refactor(scar): refactor scar to allow efficient usage of GPU

* refactor(scar): refactor scar to allow efficient usage of GPU

* refactor(scar): refactor scar to allow efficient usage of GPU

* refactor(scar): refactor scar to allow efficient usage of GPU

* refactor(scar): not output native frequencies by default

* refactor(scar): refactor dataloader

* refactor(scar): remove redundant codes

* refactor(scar): optimize dataloading

* refactor(vae): refactor stochastic rounding for performance

* chore: rewrite device log information

* docs(scar): correct docs for scar

* docs(tutorials): update tutorial notebooks

* docs(scar): refactor docs

* docs(scar): add docs for cache_capacity parameter

* refactor(main): refactor command line tool

* refator(scar): refactor scar to automate calculation of ambient profile in the case of no ambient profile provided

* fix(main): fix a bug

* fix(main): fix a bug

* fix(test): lower down sample size for test

* docs(scar): update version in doc

* docs(tutorial): update notebooks

* docs(tutorial): add a tutorial for batch denoising

* refactor(docs): reset semantic_release to main branch

* docs(tutorial): update hyperlink

* fix(workflow): update semantic release

* fix(workflow): update semantic release

* fix(workflow): update semantic release

---------

Co-authored-by: EC2 Default User <ec2-user@ip-172-16-10-142.us-east-2.compute.internal>
    @CaibinSh
    CaibinSh and EC2 Default User authored Aug 14, 2024
    Configuration menu
    Copy the full SHA
    3d65da8 View commit details
    Browse the repository at this point in the history

  10. fix(workflow): update semantic release

    @CaibinSh
    CaibinSh committed Aug 14, 2024
    Configuration menu
    Copy the full SHA
    8adb533 View commit details
    Browse the repository at this point in the history

  11. Merge branch 'main' into develop

    @CaibinSh
    CaibinSh authored Aug 14, 2024
    Configuration menu
    Copy the full SHA
    9c6a9e2 View commit details
    Browse the repository at this point in the history

  12. chore: change semantic release branch

    @CaibinSh
    CaibinSh committed Aug 14, 2024
    Configuration menu
    Copy the full SHA
    5d882b7 View commit details
    Browse the repository at this point in the history

  13. Merge branch 'develop' of https://github.com/Novartis/scar into develop

    @CaibinSh
    CaibinSh committed Aug 14, 2024
    Configuration menu
    Copy the full SHA
    92e3a86 View commit details
    Browse the repository at this point in the history

  14. chore: change semantic release branch

    @CaibinSh
    CaibinSh committed Aug 14, 2024
    Configuration menu
    Copy the full SHA
    9d950b1 View commit details
    Browse the repository at this point in the history

  15. chore: change semantic release branch

    @CaibinSh
    CaibinSh committed Aug 14, 2024
    Configuration menu
    Copy the full SHA
    0b28e11 View commit details
    Browse the repository at this point in the history

  16. chore: change semantic release branch

    @CaibinSh
    CaibinSh committed Aug 14, 2024
    Configuration menu
    Copy the full SHA
    c89123a View commit details
    Browse the repository at this point in the history