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O957/README.md

Odysseus_Homesickness_by_Alexander_Rothaug_1910

A 1910 oil painting called Odysseus’ Homesickness by Alexander Rothaug (March 13, 1870 — March 5, 1946).

Welcome!

Note

This repository contains some information about my work and GitHub activity. Means of contacting me are also provided.

Overview Of Public, Non-Work Repositories

Active

Repository   Description
O957 The author's personal GitHub profile. Contained therein are some resources and decisions that the author has made concerning his use of GitHub. This repository exists as a place for onlookers to provide the author with feedback.
O957-Template A template I find useful for setting up Python and R repositories.
paleo-labels A Python package for writing precisely formatted labels for natural specimens and related items, such as collections and excursions.
Anki-Decks The author's personal Anki workflow, making use of genanki.
Re-Wittmann-TDWMFC-2024 A partial replication in Python of the 2024 paper (The Demographic-Wealth model for cliodynamics) by Wittmann and Kuehn.
Programming-Protocols Protocols for programming that I attempt to abide by.
Genetic-Evolution-Tournament A Metaculus human judgment forecasting tournament established to generate forecasts and scenarios pertaining to the use of human genetic and reproductive technologies for treatment and enhancement. (Note: this has been transferred to another individual)

Stale

Repository   Description
Quarto-Website-Materials Templates for Quarto websites (blog pages, projects, and data visualization dashboards) for the author to reference in his work.
Personal-Helpers The author's various templates for tasks in research and data science.
Forecasting-Tornadoes The authors' attempts at forecasting and modelling tornados in the US.
Historical-Dynamics-Python Implementations in Python using Diffrax of the models described in Peter Turchin's 2003 book Historical Dynamics.
Mathematics-Artwork The author's personal mathematical artworks.
Aggregated-Model-Descriptions This repository contains a website with descriptions and some documentation for models that the author and friends have built.
Overview Of Public, Work Repositories
Repository   Description Role
forecasttools-py A Python package for common pre- and post-processing operations done by CFA Predict for short term forecasting, nowcasting, and scenario modeling. Admin
pyrenew Python package for multi-signal Bayesian renewal modeling with JAX and NumPyro. Developer
pyrenew-flu-light A replication in Python and PyRenew of a renewal model written in Epidemia for forecasting influenza hospital admissions. Admin
covid19-forecast-hub A repository run by the US CDC to collect forecasts of weekly incident COVID-19 hospital admissions. Developer
hubverse-annotator Locally-hosted web application for visualization of hubverse formatted observations and model forecasts and for annotation of data and models. Admin
rsv-forecast-hub A repository run by the Centers for Disease Control and Prevention (CDC) to collect forecasts of weekly incident respiratory syncytial virus (RSV) hospitalizations. Admin
External Repositories I Have Contributed To
Repository   Description
longevity-paper Supporting code for the paper "Identifying Longevity Associated Genes by Integrating Gene Expression and Curated Annotations".
paleobioDB R interface to the Paleobiology Database.
rphylopic Get Silhouettes of Organisms from PhyloPic.
hubTemplate Hubverse repository template.
pylabrobot interactive & hardware agnostic SDK for lab automation.
covid19-forecast-hub A repository run by the US CDC to collect forecasts of weekly incident COVID-19 hospital admissions.
FluSight-forecast-hub A repository to collect forecasts of weekly incident influenza hospital admissions.
Contributions Over The Years On GitHub
2025

2024

2023

Contact Me

To contact me with (greetings / criticism / advice / other remarks):

  • Email [my-username] + [at-symbol] + [proton] + [dot-symbol] + [me]

Feel free also to create an issue or pull request into this repository with (greetings / criticism / advice / other remarks).

I am open to conversation and co-working and to conducting data science projects (in geology, paleontology, genetics, human reproduction, metascience, cliodynamics, forecasting, AI safety) together.

Pinned Loading

  1. CDCgov/covid19-forecast-hub CDCgov/covid19-forecast-hub Public

    A repository run by the US CDC to collect forecasts of weekly incident COVID-19 hospital admissions.

    R 17 23

  2. paleo-labels paleo-labels Public

    A Python package for writing and formatting labels for geological, paleontological, and biological specimens and related items, such localities and expeditions.

    Python 4

  3. CDCgov/forecasttools-py CDCgov/forecasttools-py Public

    A Python package for common pre- and post-processing operations done by CFA Predict for short term forecasting, nowcasting, and scenario modeling.

    Python 8 2

  4. CDCgov/hubverse-annotator CDCgov/hubverse-annotator Public

    Locally-hosted web application for visualization of hubverse formatted observations and model forecasts and for annotation of data and models.

    Python 3

  5. CDCgov/pyrenew-flu-light CDCgov/pyrenew-flu-light Public

    A replication in Python and PyRenew of a renewal model written in Epidemia for forecasting influenza hospital admissions.

    Python 1 2

  6. CDCgov/PyRenew CDCgov/PyRenew Public

    Python package for multi-signal Bayesian renewal modeling with JAX and NumPyro.

    Python 17 7