PBS scripts for running nanopore genomics analyses on Australia's NCI Gadi Supercomputer.
These scripts use software installed under the if89 project (Australian BioCommons Tools and Workflows project). If you have an NCI account, simply join the if89 project using the myNCI and start using these scripts with software already installed on Gadi through project if89.
See the comments in the scripts to identify which variables you should change.
- basecall/buttery-eel.pbs.sh - Basecall a S/BLOW5 file using buttery-eel wrapper for Guppy
- basecall/slow5-dorado.pbs.sh - Basecall a S/BLOW5 file using slow5-dorado, a fork of ONT's Dorado that supports S/BLOW5.