Merge branch 'ktn_revealcpb' of https://github.com/Olink-Proteomics/O… #2314
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| # Workflow derived from https://github.com/r-lib/actions/tree/master/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| push: | |
| branches-ignore: | |
| - 'main' | |
| name: render-and-document | |
| jobs: | |
| render-and-document: | |
| name: render-and-document | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 60 | |
| env: | |
| GITHUB_PAT: ${{ secrets.OA_PAT }} | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 0 | |
| token: ${{ secrets.OA_PAT }} | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| with: | |
| pandoc-version: '2.18' | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| working-directory: OlinkAnalyze | |
| extra-packages: rmarkdown, roxygen2, devtools | |
| - name: Render Rmarkdown files | |
| run: | | |
| RMD_PATH=($(find . -iname "*.rmd" | grep -v vignette || echo "No Rmd found")) | |
| Rscript -e 'for (f in commandArgs(TRUE)) if (file.exists(f)) rmarkdown::render(f)' ${RMD_PATH[*]} | |
| - name: Commit results | |
| run: | | |
| git config --local user.name "$GITHUB_ACTOR" | |
| git config --local user.email "$GITHUB_ACTOR@users.noreply.github.com" | |
| git commit -am 'Re-build Rmarkdown files' || echo "No changes to commit" | |
| - name: Document | |
| run: Rscript -e 'roxygen2::roxygenise(package.dir = "OlinkAnalyze")' | |
| - name: Commit results | |
| run: | | |
| git config --local user.name "$GITHUB_ACTOR" | |
| git config --local user.email "$GITHUB_ACTOR@users.noreply.github.com" | |
| git add OlinkAnalyze/man/\* OlinkAnalyze/NAMESPACE | |
| git commit -m 'Document' || echo "No changes to commit" | |
| - name: Pull first | |
| run: | | |
| git pull | |
| - name: Push | |
| run: | | |
| git push origin |