use shared OSP workflows (#1458)

* use shared workflow submited in Open-Systems-Pharmacology/Workflows#33

* Disable default jekkyl github website

.github/workflows/main-workflow.yaml

@@ -5,11 +5,16 @@ on:
     branches: [main]
   pull_request:
 
+permissions: write-all
+
 jobs:
   bump-dev-version: # only do that when actually merging in main/develop branch
     if: github.event_name != 'pull_request'
-    uses: ./.github/workflows/bump-dev-version.yaml
-    secrets: inherit
+    uses: Open-Systems-Pharmacology/Workflows/.github/workflows/bump_dev_version_tag_branch.yaml@main
+    with:
+      app-id: ${{ vars.VERSION_BUMPER_APPID }}
+    secrets:
+      private-key: ${{ secrets.VERSION_BUMPER_SECRET }}
 
   update-core-files:
     if: ${{ !cancelled() && github.event_name == 'pull_request' }}
@@ -19,15 +24,16 @@ jobs:
   R-CMD-Check:
     if: ${{ !cancelled() }}
     needs: [update-core-files]
-    uses: ./.github/workflows/R-CMD-check.yaml
+    uses: Open-Systems-Pharmacology/Workflows/.github/workflows/R-CMD-check-build.yaml@main
 
   test-coverage:
     if: ${{ !cancelled() }}
     needs: [update-core-files]
-    uses: ./.github/workflows/test-coverage.yaml
+    uses: Open-Systems-Pharmacology/Workflows/.github/workflows/test-coverage.yaml@main
 
 
   pkgdown:
     if: ${{ !cancelled() }}
     needs: [update-core-files]
-    uses: ./.github/workflows/pkgdown.yaml
+    uses:  Open-Systems-Pharmacology/Workflows/.github/workflows/pkgdown.yaml@main
+

DESCRIPTION

@@ -141,7 +141,7 @@ Collate:
     'value-point.R'
     'zzz.R'
     'zzz_deprecated.R'
-Remotes:  
+Remotes:
     Open-Systems-Pharmacology/rSharp,
     ospsuite.utils=Open-Systems-Pharmacology/OSPSuite.RUtils,
     tlf=Open-Systems-Pharmacology/TLF-Library

_pkgdown.yml

@@ -1,64 +1,64 @@
-url: https://www.open-systems-pharmacology.org/OSPSuite-R/
-
-template:
-  bootstrap: 5
-
-development:
-  mode: devel
-
-authors:
-  Open-Systems-Pharmacology Community:
-    href: https://www.open-systems-pharmacology.org/
-    html: <img src='https://open-systems-pharmacology.github.io/ospsuiteR/reference/figures/osp.png'
-      style='max-width:33px' alt="Open System Pharmacology Logo">Open Systems Pharmacology
-  Pavel Balazki:
-    href: https://github.com/PavelBal
-  Michael Sevestre:
-    href: https://github.com/msevestre
-  Juri Solodenko:
-    href: https://github.com/Yuri05
-  Felix Mil:
-    href: https://github.com/Felixmil
-  Indrajeet Patil:
-    href: https://sites.google.com/site/indrajeetspatilmorality/
-
-articles:
-
-  - title: Primary functions
-    navbar: Primary functions
-    desc: Details about primary functions
-    contents:
-    - load-get
-    - set-values
-    - run-simulation
-    - pk-analysis
-    - sensitivity-analysis
-    - create-individual
-    - create-run-population
-
-  - title: Figure creation
-    navbar: Figure creation
-    desc: How to create standard figures
-    contents:
-    - observed-data
-    - data-combined
-    - data-combined-plotting
-
-  - title: Miscellaneous
-    navbar: Miscellaneous
-    desc: Salad of various things
-    contents:
-    - efficient-calculations
-    - table-parameters
-    - unit-conversion
-    - PKSim-installation
-
-figures:
-  dev: ragg::agg_png
-  fig.ext: png
-  dev.args: []
-  fig.width: 10
-  fig.asp: 0.618
-  fig.retina: 1
-  bg: NA
-  other.parameters: []
+url: https://www.open-systems-pharmacology.org/OSPSuite-R/
+
+template:
+  bootstrap: 5
+
+development:
+  mode: devel
+
+authors:
+  Open-Systems-Pharmacology Community:
+    href: https://www.open-systems-pharmacology.org/
+    html: <img src='https://open-systems-pharmacology.github.io/ospsuiteR/reference/figures/osp.png'
+      style='max-width:33px' alt="Open System Pharmacology Logo">Open Systems Pharmacology
+  Pavel Balazki:
+    href: https://github.com/PavelBal
+  Michael Sevestre:
+    href: https://github.com/msevestre
+  Juri Solodenko:
+    href: https://github.com/Yuri05
+  Felix Mil:
+    href: https://github.com/Felixmil
+  Indrajeet Patil:
+    href: https://sites.google.com/site/indrajeetspatilmorality/
+
+articles:
+
+  - title: Primary functions
+    navbar: Primary functions
+    desc: Details about primary functions
+    contents:
+    - load-get
+    - set-values
+    - run-simulation
+    - pk-analysis
+    - sensitivity-analysis
+    - create-individual
+    - create-run-population
+
+  - title: Figure creation
+    navbar: Figure creation
+    desc: How to create standard figures
+    contents:
+    - observed-data
+    - data-combined
+    - data-combined-plotting
+
+  - title: Miscellaneous
+    navbar: Miscellaneous
+    desc: Salad of various things
+    contents:
+    - efficient-calculations
+    - table-parameters
+    - unit-conversion
+    - PKSim-installation
+
+figures:
+  dev: ragg::agg_png
+  fig.ext: png
+  dev.args: []
+  fig.width: 10
+  fig.asp: 0.618
+  fig.retina: 1
+  bg: NA
+  other.parameters: []