Adopt code from py2neo to remove the use of the id
function in cyph…
#1343
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name: "CI - Integration" | |
on: | |
pull_request: | |
branches: | |
- main | |
push: | |
branches: | |
- main | |
schedule: | |
# At 07:00 UTC on Monday and Thursday. | |
- cron: "0 7 * * 1,4" | |
concurrency: | |
group: "${{ github.workflow }}-${{ github.ref }}" | |
cancel-in-progress: true | |
defaults: | |
run: | |
shell: bash -l {0} | |
jobs: | |
tests: | |
runs-on: ${{ matrix.OS }}-latest | |
name: "tests" | |
strategy: | |
fail-fast: false | |
matrix: | |
os: ['ubuntu'] | |
python-version: | |
- "3.10" | |
- "3.11" | |
- "3.12" | |
steps: | |
- uses: actions/checkout@v4 | |
- uses: mamba-org/setup-micromamba@v1 | |
with: | |
environment-file: devtools/conda-envs/test.yml | |
create-args: >- | |
python=${{ matrix.python-version }} | |
- name: "Install" | |
run: python -m pip install --no-deps -e . | |
- name: "Environment Information" | |
run: | | |
micromamba info | |
micromamba list | |
- name: "Run tests" | |
run: | | |
pytest -v --cov=alchemiscale --cov-report=xml alchemiscale/tests | |
- name: codecov | |
if: ${{ github.repository == 'OpenFreeEnergy/alchemiscale' | |
&& github.event != 'schedule' }} | |
uses: codecov/codecov-action@v4 | |
with: | |
token: ${{ secrets.CODECOV_TOKEN }} | |
file: coverage.xml | |
fail_ci_if_error: False | |
verbose: True |