Skip to content

Issues: OpenGene/GeneFuse

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

33 Open 6 Closed
33 Open 6 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Multiple runs show different results.
#44 opened Feb 1, 2024 by Crispy13
Maybe a typo in the source code, abs(left.startGP.position) < abs(left.startGP.position)?
#43 opened Jan 21, 2024 by Crispy13
IGH-BCL2 is not detected but bam is supported
#42 opened Jun 26, 2023 by swxzh621
1
different gene set gives different results for same fusion
#41 opened May 24, 2023 by mhanbioinfo
the data size of raw data effected fusion result
#40 opened Apr 24, 2023 by Tina610
JSON output corrupted due to a not escaped double-quotes character
#39 opened Dec 9, 2022 by FrancescaMiccolis
1
how to filter fusion result
#38 opened Apr 18, 2022 by summerghw
GOPC_ENST00000052569.6 location
#37 opened Mar 16, 2022 by iamwjy1
tmprss-erg
#36 opened Mar 3, 2022 by IlyIla
GeneFuse on RNA-seq
#34 opened Apr 16, 2021 by deb0612
How to get VAF info from genefuse results?
#33 opened Mar 9, 2021 by ZehangJiang
std::bad_alloc
#32 opened Nov 16, 2020 by Xiaohuaniu0032
Can not get the fusions with the testdata
#31 opened Oct 20, 2020 by kingyang728
1
while running Stuck
#30 opened Aug 21, 2020 by hulai-hulai
10
GeneFuse ignores fusions in TCF3
#27 opened Jun 22, 2020 by nvolkovaGEL
3
Fusion-making .py script does not take into account gene orientation
#26 opened Jun 11, 2020 by nvolkovaGEL
8
make: *** No rule to make target 'install'. Stop.
#20 opened Nov 11, 2019 by jrhaulung
2
primary transcripts used in fusion.csv
#19 opened Sep 16, 2019 by zhengxinchang
1
How to use GeneFuse to detect fusion for nanopore sequencing fastq?
#18 opened Jul 18, 2019 by pepenglp
1
gen_fusion_file.jl
#17 opened Mar 5, 2019 by gerbarinov
2
No fusion found using tests data
#16 opened Jan 1, 2019 by chizhenfen
20
the gen_fusion_file.jl script does not work because OpenGene can not be installed
#15 opened Oct 9, 2018 by yahiaBioinfo
4
error when creating fusion.csv file
#14 opened Aug 8, 2018 by ericavalentini
3
可否用gtf文件产生融合基因列表的csv文件？
#13 opened Jul 30, 2018 by wangshun1121
how to see the version of genefuse?
#11 opened May 25, 2018 by ShannonDaddy
1
ProTip! Follow long discussions with comments:>50.