Merge branch 'main' into combine_builders

.github/actions/prepare_environment/action.yml

@@ -0,0 +1,152 @@
+name: Prepare Environment
+
+inputs:
+    NAME:
+        required: true
+        type: string
+    PY:
+        required: true
+        type: string
+    NUMPY:
+        required: true
+        type: string
+    SCIPY:
+        required: true
+        type: string
+    PYOPTSPARSE:
+        required: true
+        type: string
+    SNOPT:
+        required: true
+        type: string
+    OPENMDAO:
+        required: true
+        type: string
+    DYMOS:
+        required: true
+        type: string
+    SSH_PRIVATE_KEY:
+        required: true
+    SSH_KNOWN_HOSTS:
+        required: true
+    SNOPT_LOCATION_77:
+        required: true
+
+runs:
+  using: "composite"
+  steps:
+    - name: Display run details
+      shell: bash
+      run: |
+        echo "============================================================="
+        echo "Run #${GITHUB_RUN_NUMBER}"
+        echo "Run ID: ${GITHUB_RUN_ID}"
+        echo "Testing: ${GITHUB_REPOSITORY}"
+        echo "Triggered by: ${GITHUB_EVENT_NAME}"
+        echo "Initiated by: ${GITHUB_ACTOR}"
+        echo "============================================================="
+
+    - name: Create SSH key
+      shell: bash
+      env:
+        SSH_PRIVATE_KEY: ${{inputs.SSH_PRIVATE_KEY}}
+        SSH_KNOWN_HOSTS: ${{inputs.SSH_KNOWN_HOSTS}}
+      run: |
+        mkdir -p ~/.ssh/
+        echo "$SSH_PRIVATE_KEY" > ~/.ssh/id_rsa
+        sudo chmod 600 ~/.ssh/id_rsa
+        echo "$SSH_KNOWN_HOSTS" > ~/.ssh/known_hosts
+
+    - name: Setup miniconda
+      uses: conda-incubator/setup-miniconda@v2
+      with:
+        auto-update-conda: true
+        python-version: ${{ inputs.PY }}
+        channels: conda-forge
+
+    - name: Install dependencies
+      shell: bash -l {0}
+      run: |
+        echo "============================================================="
+        echo "Install dependencies"
+        echo "============================================================="
+        conda install numpy=${{ inputs.NUMPY }} scipy=${{ inputs.SCIPY }} -q -y
+        conda install matplotlib pandas panel hvplot -q -y
+        pip install testflo -q
+
+    - name: Install pyOptSparse
+      if: inputs.PYOPTSPARSE
+      shell: bash -l {0}
+      run: |
+        echo "============================================================="
+        echo "Install pyoptsparse"
+        echo "============================================================="
+        if [[ "${{ inputs.SNOPT }}" == "7.7" && "${{ inputs.SNOPT_LOCATION_77 }}" ]]; then
+          mkdir SNOPT
+          echo "  > Secure copying SNOPT 7.7 over SSH"
+          scp -qr ${{ inputs.SNOPT_LOCATION_77 }} SNOPT
+          SNOPT="-s SNOPT/src"
+        elif [[ "${{ inputs.SNOPT }}" ]]; then
+          echo "SNOPT version ${{ inputs.SNOPT }} was requested but source is not available"
+        fi
+
+        conda config --add channels conda-forge
+
+        pip install git+https://github.com/OpenMDAO/build_pyoptsparse
+        build_pyoptsparse -v -b ${{ inputs.PYOPTSPARSE }} $SNOPT
+
+    - name: Install OpenMDAO
+      if: inputs.OPENMDAO
+      shell: bash -l {0}
+      run: |
+        echo "============================================================="
+        echo "Install OpenMDAO"
+        echo "============================================================="
+        if [[ "${{ inputs.OPENMDAO }}" == "dev" ]]; then
+          pip install git+https://github.com/OpenMDAO/OpenMDAO
+        elif [[ "${{ inputs.OPENMDAO }}" == "latest" ]]; then
+          pip install openmdao
+        else
+          pip install openmdao==${{ inputs.OPENMDAO }}
+        fi
+
+    - name: Install Dymos
+      if: inputs.DYMOS
+      shell: bash -l {0}
+      run: |
+        echo "============================================================="
+        echo "Install Dymos"
+        echo "============================================================="
+        if [[ "${{ inputs.DYMOS }}" == "dev" ]]; then
+          pip install git+https://github.com/OpenMDAO/Dymos
+        elif [[ "${{ inputs.DYMOS }}" == "latest" ]]; then
+          pip install dymos
+        else
+          pip install dymos==${{ inputs.DYMOS }}
+        fi
+
+    - name: Checkout Aviary
+      uses: actions/checkout@v4
+
+    - name: Install Aviary
+      shell: bash -l {0}
+      run: |
+        echo "============================================================="
+        echo "Install Aviary"
+        echo "============================================================="
+        pip install -e .[all]
+
+    - name: Display conda environment info
+      shell: bash -l {0}
+      run: |
+        conda info
+        conda list
+        conda env export --name ${{ inputs.NAME }}_env --file ${{ inputs.NAME }}_environment.yml
+
+    - name: 'Upload environment artifact'
+      uses: actions/upload-artifact@v3
+      with:
+        name: ${{ inputs.NAME }}_environment
+        path: ${{ inputs.NAME }}_environment.yml
+        retention-days: 5
+

.github/workflows/test_benchmarks.yml

@@ -0,0 +1,60 @@
+# Run Tests
+
+name: Test Benchmarks
+
+on:
+  # Trigger on push or pull request events for the main branch
+  push:
+    branches: [ main ]
+  pull_request:
+    branches: [ main ]
+  merge_group:
+    branches: [ main ]
+
+  # Allow running the workflow manually from the Actions tab
+  workflow_dispatch:
+
+
+jobs:
+
+  latest_benchmarks:
+    runs-on: ubuntu-latest
+    timeout-minutes: 90
+
+    steps:
+      - name: Checkout actions
+        uses: actions/checkout@v3
+        with:
+          sparse-checkout: |
+            .github/actions
+          path: actions
+
+      - name: prepare_benchmark_environment
+        uses: ./actions/.github/actions/prepare_environment
+        with:
+            NAME: 'latest'
+            PY: 3
+            NUMPY: 1
+            SCIPY: 1
+            PYOPTSPARSE: 'v2.9.1'
+            SNOPT: '7.7'
+            OPENMDAO: 'latest'
+            DYMOS: 'latest'  
+            SSH_PRIVATE_KEY: ${{secrets.SSH_PRIVATE_KEY}}
+            SSH_KNOWN_HOSTS: ${{secrets.SSH_KNOWN_HOSTS}}
+            SNOPT_LOCATION_77: ${{ secrets.SNOPT_LOCATION_77 }}
+
+      - name: Run benchmarks
+        shell: bash -l {0}
+        run: |
+          echo "============================================================="
+          echo "Run Benchmarks"
+          echo "============================================================="
+          testflo . --testmatch=bench_test*
+
+      - name: Checkout actions (again)
+        uses: actions/checkout@v3
+        with:
+          sparse-checkout: |
+            .github/actions
+          path: actions

.github/workflows/test_docs.yml

@@ -0,0 +1,97 @@
+# Run Tests
+
+name: Test Docs
+
+on:
+  # Trigger on push or pull request events for the main branch
+  push:
+    branches: [ main ]
+  pull_request:
+    branches: [ main ]
+  pull_request_target:
+    branches: [ main ]
+  merge_group:
+    branches: [ main ]
+
+  # Allow running the workflow manually from the Actions tab
+  workflow_dispatch:
+
+
+jobs:
+
+  latest_docs:
+    runs-on: ubuntu-latest
+    timeout-minutes: 90
+
+    steps:
+      - name: Checkout actions
+        uses: actions/checkout@v3
+        with:
+          sparse-checkout: |
+            .github/actions
+          path: actions
+
+      - name: prepare_docs_environment
+        uses: ./actions/.github/actions/prepare_environment
+        with:
+            NAME: 'latest'
+            PY: 3
+            NUMPY: 1
+            SCIPY: 1
+            PYOPTSPARSE: 'v2.9.1'
+            SNOPT: '7.7'
+            OPENMDAO: 'latest'
+            DYMOS: 'latest'  
+            SSH_PRIVATE_KEY: ${{secrets.SSH_PRIVATE_KEY}}
+            SSH_KNOWN_HOSTS: ${{secrets.SSH_KNOWN_HOSTS}}
+            SNOPT_LOCATION_77: ${{ secrets.SNOPT_LOCATION_77 }}
+
+      - name: Build docs
+        shell: bash -l {0}
+        run: |
+          pip install -U jupyter-book
+          cd aviary/docs
+          echo "============================================================="
+          echo "Build the docs"
+          echo "============================================================="
+          bash build_book.sh
+
+      - name: Display doc build reports
+        continue-on-error: True
+        shell: bash -l {0}
+        run: |
+          cd $HOME/work/Aviary/Aviary/aviary/docs
+          find _build/html/reports/ -type f -name '*.log' \
+          -exec echo "#################################################################" \; \
+          -exec echo {} \; \
+          -exec echo "#################################################################" \; \
+          -exec cat {} \;
+
+      - name: Publish docs to github.io
+        if: |
+          github.event_name == 'push' && github.ref == 'refs/heads/main'
+        shell: bash -l {0}
+        run: |
+          echo "============================================================="
+          echo "Publishing Docs to github.io"
+          echo "============================================================="
+          pip install ghp-import
+          cd $HOME/work/Aviary/Aviary/aviary
+          ghp-import -n -p -f docs/_build/html
+
+      - name: Scan for security issues
+        shell: bash -l {0}
+        run: |
+          python -m pip install bandit
+          echo "============================================================="
+          echo "Run bandit scan for medium/high severity issues"
+          echo "============================================================="
+          cd $GITHUB_WORKSPACE
+          python -m bandit -r -ll aviary
+
+      - name: Checkout actions (again)
+        uses: actions/checkout@v3
+        with:
+          sparse-checkout: |
+            .github/actions
+          path: actions