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This Python package is automatically generated by the Swagger Codegen project:
- API version: 1.3.2-rdg
- Package version: 1.3.2
- Build package: io.swagger.codegen.languages.PythonClientCodegen
Python 2.7 and 3.4+
If the python package is hosted on Github, you can install directly from Github
pip install git+https://github.com/OpenSILEX/opensilexClientToolsPython.git@1.3.2
(you may need to run pip
with root permission: sudo pip install git+https://github.com/OpenSILEX/opensilexClientToolsPython.git@1.3.2
)
Then import the package:
import opensilexClientToolsPython
Install via Setuptools.
python setup.py install --user
(or sudo python setup.py install
to install the package for all users)
Then import the package:
import opensilexClientToolsPython
Please follow the installation procedure and then run the following:
import opensilexClientToolsPython
from pprint import pprint
# usage of a created instance of the API class
pythonClient = opensilexClientToolsPython.ApiClient() # TO have more detail on the execution of the requests you can pass verbose=True
# Don't forget to change the host to your instance and use a password
# and identifier from an account that exists on said instance
pythonClient.connect_to_opensilex_ws(
identifier="guest@opensilex.org",
password="guest",
host="https://localhost/rest"
)
anotation_api_instance = opensilexClientToolsPython.AnnotationsApi(pythonClient)
target = "http://www.opensilex.org/demo/2018/o18000076" # str | Target URI (optional)
try:
# Count annotations
api_response = anotation_api_instance.count_annotations(target=target)
pprint(api_response)
except opensilexClientToolsPython.rest.ApiException as e:
print("Api Exception when calling AnnotationsApi->count_annotations: %s\n" % e)
# Other more specific exceptions inherit from this general class :
# - ApiDuplicateException for duplicated data on POST
# - ApiURIExistsException for URI already exists on POST
# - ApiURINotFoundException for URI not found on GET
# These can be found in rest.py
except Exception as e:
print("Exception when calling AnnotationsApi->count_annotations: %s\n" % e)
All URIs are relative to **
Class | Method | HTTP request | Description |
---|---|---|---|
AnnotationsApi | count_annotations | GET /core/annotations/count | Count annotations |
AnnotationsApi | create_annotation | POST /core/annotations | Create an annotation |
AnnotationsApi | delete_annotation | DELETE /core/annotations/{uri} | Delete an annotation |
AnnotationsApi | get_annotation | GET /core/annotations/{uri} | Get an annotation |
AnnotationsApi | search_annotations | GET /core/annotations | Search annotations |
AnnotationsApi | search_motivations | GET /core/annotations/motivations | Search motivations |
AnnotationsApi | update_annotation | PUT /core/annotations | Update an annotation |
AreaApi | create_area | POST /core/area | Add an area |
AreaApi | delete_area | DELETE /core/area/{uri} | Delete an area |
AreaApi | export_geospatial | POST /core/area/export_geospatial | Export a given list of areas URIs to shapefile |
AreaApi | get_by_uri | GET /core/area/{uri} | Get an area |
AreaApi | search_intersects | POST /core/area/intersects | Get area whose geometry corresponds to the Intersections |
AreaApi | update_area | PUT /core/area | Update an area |
AuthenticationApi | authenticate | POST /security/authenticate | Authenticate a user and return an access token |
AuthenticationApi | authenticate_open_id | GET /security/openid | Authenticate a user and return an access token |
AuthenticationApi | authenticate_saml | GET /security/saml | Authenticate a user and return an access token from SAML response |
AuthenticationApi | forgot_password | POST /security/forgot-password | Send an e-mail confirmation |
AuthenticationApi | get_credentials_groups | GET /security/credentials | Get list of existing credentials indexed by Swagger @API concepts in the application |
AuthenticationApi | logout | DELETE /security/logout | Logout by discarding a user token |
AuthenticationApi | renew_password | PUT /security/renew-password | Update user password |
AuthenticationApi | renew_token | PUT /security/renew-token | Send back a new token if the provided one is still valid |
BRAPIApi | get_calls | GET /brapi/v1/calls | Check the available BrAPI calls |
BRAPIApi | get_germplasm_by_search | GET /brapi/v1/germplasm | Submit a search request for germplasm (type accession in OpenSILEX |
BRAPIApi | get_observation_units | GET /brapi/v1/studies/{studyDbId}/observationunits | List all the observation units measured in the study. |
BRAPIApi | get_observation_variables | GET /brapi/v1/studies/{studyDbId}/observationvariables | List all the observation variables measured in the study. |
BRAPIApi | get_observations | GET /brapi/v1/studies/{studyDbId}/observations | Get the observations associated to a specific study |
BRAPIApi | get_studies | GET /brapi/v1/studies | Retrieve studies information |
BRAPIApi | get_studies_search | GET /brapi/v1/studies-search | Retrieve studies information |
BRAPIApi | get_study_details | GET /brapi/v1/studies/{studyDbId} | Retrieve study details |
BRAPIApi | get_variable_details | GET /brapi/v1/variables/{observationVariableDbId} | Retrieve variable details by id |
BRAPIApi | get_variables_list | GET /brapi/v1/variables | BrAPIv1CallDTO to retrieve a list of observationVariables available in the system |
DataApi | add_list_data | POST /core/data | Add data |
DataApi | count_data | POST /core/data/count | Count data |
DataApi | count_datafiles | GET /core/datafiles/count | Count datafiles |
DataApi | create_provenance | POST /core/provenances | Add a provenance |
DataApi | delete_data | DELETE /core/data/{uri} | Delete data |
DataApi | delete_data_on_search | DELETE /core/data | Delete data on criteria |
DataApi | delete_provenance | DELETE /core/provenances/{uri} | Delete a provenance that doesn't describe data |
DataApi | export_data | GET /core/data/export | Export data |
DataApi | export_data1 | POST /core/data/export | Export data |
DataApi | get_data | GET /core/data/{uri} | Get data |
DataApi | get_data_file | GET /core/datafiles/{uri} | Get a data file |
DataApi | get_data_file_description | GET /core/datafiles/{uri}/description | Get a data file description |
DataApi | get_data_file_descriptions_by_search | GET /core/datafiles | Search data files |
DataApi | get_data_file_descriptions_by_targets | POST /core/datafiles/by_targets | Search data files for a large list of targets |
DataApi | get_data_list_by_targets | POST /core/data/by_targets | Search data for a large list of targets |
DataApi | get_data_series_by_facility | GET /core/data/data_serie/facility | Get all data series associated with a facility |
DataApi | get_datafiles_provenances | GET /core/datafiles/provenances | Search provenances linked to datafiles |
DataApi | get_datafiles_provenances_by_targets | POST /core/datafiles/provenances/by_targets | Search provenances linked to datafiles for a large list of targets |
DataApi | get_mathematical_operators | GET /core/data/mathematicalOperators | Get mathematical operators |
DataApi | get_pictures_thumbnails | GET /core/datafiles/{uri}/thumbnail | Get a picture thumbnail |
DataApi | get_provenance | GET /core/provenances/{uri} | Get a provenance |
DataApi | get_provenances_by_ur_is | GET /core/provenances/by_uris | Get a list of provenances by their URIs |
DataApi | get_used_provenances | GET /core/data/provenances | Search provenances linked to data |
DataApi | get_used_provenances_by_targets | POST /core/data/provenances/by_targets | Search provenances linked to data for a large list of targets |
DataApi | get_used_variables | GET /core/data/variables | Get variables linked to data |
DataApi | import_csv_data | POST /core/data/import | Import a CSV file for the given provenanceURI |
DataApi | post_data_file | POST /core/datafiles | Add a data file |
DataApi | post_data_file_paths | POST /core/datafiles/description | Describe datafiles and give their relative paths in the configured storage system. In the case of already stored datafiles. |
DataApi | search_data_list | GET /core/data | Search data |
DataApi | search_data_list_by_targets | POST /core/data/search | Search data for a large list of targets |
DataApi | search_provenance | GET /core/provenances | Get provenances |
DataApi | update | PUT /core/data | Update data |
DataApi | update_confidence | PUT /core/data/{uri}/confidence | Update confidence index |
DataApi | update_provenance | PUT /core/provenances | Update a provenance |
DataApi | validate_csv | POST /core/data/import_validation | Import a CSV file for the given provenanceURI. |
DataverseApi | available_dataset_languages | GET /dataverse/datasetLanguages | Get the available dataset languages |
DataverseApi | available_dataset_metadata_languages | GET /dataverse/datasetMetadataLanguages | Get the available dataset metadata languages |
DataverseApi | create_dataset | POST /dataverse | Create experiment as a Dataset |
DataverseApi | recherche_data_gouv_base_path | GET /dataverse/RechercheDataGouvBasePath | Get the Recherche Data Gouv url from the instance configuration |
DevicesApi | count_device_data | GET /core/devices/{uri}/data/count | Count device data |
DevicesApi | create_device | POST /core/devices | Create a device |
DevicesApi | delete_device | DELETE /core/devices/{uri} | Delete a device |
DevicesApi | export_devices | GET /core/devices/export | export devices |
DevicesApi | export_geospatial1 | POST /core/devices/export_geospatial | Export a given list of devices URIs to shapefile |
DevicesApi | export_list | POST /core/devices/export_by_uris | export devices |
DevicesApi | get_device | GET /core/devices/{uri} | Get device detail |
DevicesApi | get_device_by_uris | GET /core/devices/by_uris | Get devices by uris |
DevicesApi | get_device_data_files_provenances | GET /core/devices/{uri}/datafiles/provenances | Get provenances of datafiles linked to this device |
DevicesApi | get_device_data_provenances | GET /core/devices/{uri}/data/provenances | Get provenances of data that have been measured on this device |
DevicesApi | get_device_variables | GET /core/devices/{uri}/variables | Get variables linked to the device |
DevicesApi | get_devices_by_facility | GET /core/devices/{uri}/facility | Get devices by facility |
DevicesApi | import_csv | POST /core/devices/import | Import a CSV file with one device per line |
DevicesApi | search_device_data | GET /core/devices/{uri}/data | Search device data |
DevicesApi | search_device_datafiles | GET /core/devices/{uri}/datafiles | Search device datafiles descriptions |
DevicesApi | search_devices | GET /core/devices | Search devices |
DevicesApi | update_device | PUT /core/devices | Update a device |
DevicesApi | validate_csv1 | POST /core/devices/import_validation | Validate the import of a CSV file with one device per line |
DocumentsApi | count_documents | GET /core/documents/count | Count documents |
DocumentsApi | create_document | POST /core/documents | Add a document |
DocumentsApi | delete_document | DELETE /core/documents/{uri} | Delete a document |
DocumentsApi | get_document_file | GET /core/documents/{uri} | Get document |
DocumentsApi | get_document_metadata | GET /core/documents/{uri}/description | Get document's description |
DocumentsApi | search_documents | GET /core/documents | Search documents |
DocumentsApi | update_document | PUT /core/documents | Update document's description |
EventsApi | count_events | GET /core/events/count | Count events |
EventsApi | create_events | POST /core/events | Create a list of event |
EventsApi | create_moves | POST /core/events/moves | Create a list of move event |
EventsApi | delete_event | DELETE /core/events/{uri} | Delete an event |
EventsApi | delete_move_event | DELETE /core/events/moves/{uri} | Delete a move event |
EventsApi | get_event | GET /core/events/{uri} | Get an event |
EventsApi | get_event_details | GET /core/events/{uri}/details | Get an event with all it's properties |
EventsApi | get_move_event | GET /core/events/moves/{uri} | Get a move with all it's properties |
EventsApi | get_move_event_by_uris | GET /core/events/moves/by_uris | Get a list of moves with all positional information |
EventsApi | import_event_csv | POST /core/events/import | Import a CSV file with one move and one target per line |
EventsApi | import_move_csv | POST /core/events/moves/import | Import a CSV file with one move and one target per line |
EventsApi | search_events | GET /core/events | Search events |
EventsApi | update_event | PUT /core/events | Update an event |
EventsApi | update_move_event | PUT /core/events/moves | Update a move event |
EventsApi | validate_event_csv | POST /core/events/import_validation | Check a CSV file with one move and one target per line |
EventsApi | validate_move_csv | POST /core/events/moves/import_validation | Check a CSV file with one move and one target per line |
ExperimentsApi | create_experiment | POST /core/experiments | Add an experiment |
ExperimentsApi | delete_experiment | DELETE /core/experiments/{uri} | Delete an experiment |
ExperimentsApi | export_experiment_data_list | GET /core/experiments/{uri}/data/export | export experiment data |
ExperimentsApi | get_available_facilities | GET /core/experiments/{uri}/available_facilities | Get facilities available for an experiment |
ExperimentsApi | get_available_factors | GET /core/experiments/{uri}/factors | Get factors with their levels associated to an experiment |
ExperimentsApi | get_available_species | GET /core/experiments/{uri}/species | Get species present in an experiment |
ExperimentsApi | get_experiment | GET /core/experiments/{uri} | Get an experiment |
ExperimentsApi | get_experiments_by_ur_is | GET /core/experiments/by_uris | Get experiments URIs |
ExperimentsApi | get_used_variables1 | GET /core/experiments/{uri}/variables | Get variables involved in an experiment |
ExperimentsApi | import_csv_data1 | POST /core/experiments/{uri}/data/import | Import a CSV file for the given experiment URI and scientific object type. |
ExperimentsApi | search_experiment_data_list | GET /core/experiments/{uri}/data | Search data |
ExperimentsApi | search_experiment_provenances | GET /core/experiments/{uri}/provenances | Get provenances involved in an experiment |
ExperimentsApi | search_experiments | GET /core/experiments | Search experiments |
ExperimentsApi | update_experiment | PUT /core/experiments | Update an experiment |
ExperimentsApi | validate_csv2 | POST /core/experiments/{uri}/data/import_validation | Import a CSV file for the given experiment URI and scientific object type. |
FactorsApi | count_factors | GET /core/experiments/factors/count | Count factors |
FactorsApi | create_factor | POST /core/experiments/factors | Create a factor |
FactorsApi | delete_factor | DELETE /core/experiments/factors/{uri} | Delete a factor |
FactorsApi | delete_factor_level | DELETE /core/experiments/factors/levels/{uri} | Delete a factor level |
FactorsApi | get_factor_associated_experiments | GET /core/experiments/factors/{uri}/experiments | Get factor associated experiments |
FactorsApi | get_factor_by_uri | GET /core/experiments/factors/{uri} | Get a factor |
FactorsApi | get_factor_level | GET /core/experiments/factors/levels/{uri} | Get a factor level |
FactorsApi | get_factor_level_detail | GET /core/experiments/factors/levels/{uri}/details | Get a factor level |
FactorsApi | get_factor_levels | GET /core/experiments/factors/{uri}/levels | Get factor levels |
FactorsApi | get_factors_by_ur_is | GET /core/experiments/factors/by_uris | Get a list of factors by their URIs |
FactorsApi | search_categories | GET /core/experiments/factors/categories | Search categories |
FactorsApi | search_factor_levels | GET /core/experiments/factors/factor_levels | Search factors levels |
FactorsApi | search_factors | GET /core/experiments/factors | Search factors |
FactorsApi | update_factor | PUT /core/experiments/factors | Update a factor |
FaidareApi | get_calls1 | GET /faidare/v1/calls | Check the available faidare calls |
FaidareApi | get_germplasms_by_search | GET /faidare/v1/germplasm | Submit a search request for germplasm |
FaidareApi | get_locations_list | GET /faidare/v1/locations | Faidarev1CallDTO to retrieve a list of locations available in the system |
FaidareApi | get_studies_list | GET /faidare/v1/studies | Retrieve studies information |
FaidareApi | get_trials_list | GET /faidare/v1/trials | Faidarev1CallDTO to retrieve a list of trials available in the system |
FaidareApi | get_variables_list1 | GET /faidare/v1/variables | Faidarev1CallDTO to retrieve a list of observationVariables available in the system |
GermplasmApi | create_germplasm | POST /core/germplasm | Add a germplasm |
GermplasmApi | create_germplasm_group | POST /core/germplasm_group | Add a germplasm group |
GermplasmApi | delete_germplasm | DELETE /core/germplasm/{uri} | Delete a germplasm |
GermplasmApi | delete_germplasm_group | DELETE /core/germplasm_group/{uri} | Delete a germplasm group |
GermplasmApi | export_germplasm | POST /core/germplasm/export | export germplasm |
GermplasmApi | get_germplasm | GET /core/germplasm/{uri} | Get a germplasm |
GermplasmApi | get_germplasm_attribute_values | GET /core/germplasm/attributes/{attribute} | Get attribute values of all germplasm for a given attribute |
GermplasmApi | get_germplasm_attributes | GET /core/germplasm/attributes | Get attributes of all germplasm |
GermplasmApi | get_germplasm_experiments | GET /core/germplasm/{uri}/experiments | Get experiments where a germplasm has been used |
GermplasmApi | get_germplasm_group | GET /core/germplasm_group/{uri} | Get a germplasm group |
GermplasmApi | get_germplasm_group_by_ur_is | GET /core/germplasm_group/by-uris | Get germplasm groups by their URIs |
GermplasmApi | get_germplasm_group_content | GET /core/germplasm_group/{uri}/germplasm | Get a germplasm group's germplasm, paginated |
GermplasmApi | get_germplasm_group_with_germplasms | GET /core/germplasm_group/with-germplasm/{uri} | Get a germplasm group with nested germplasm details |
GermplasmApi | get_germplasms_by_uri | POST /core/germplasm/by_uris | Get a list of germplasms by their URIs |
GermplasmApi | search_germplasm | GET /core/germplasm | Search germplasm |
GermplasmApi | search_germplasm_groups | POST /core/germplasm_group/search | Search germplasm groups |
GermplasmApi | update_germplasm | PUT /core/germplasm | Update a germplasm |
GermplasmApi | update_germplasm_group | PUT /core/germplasm_group | Update a germplasm group |
MetricsApi | get_experiment_summary_history | GET /core/metrics/experiment/{uri} | Get an experiment summary history |
MetricsApi | get_running_experiments_summary | GET /core/metrics/running_experiments | Get running experiments metrics |
MetricsApi | get_system_metrics | GET /core/metrics/system | Get system metrics |
MetricsApi | get_system_metrics_summary | GET /core/metrics/system/summary | Get system metrics summary |
OntologyApi | add_class_property_restriction | POST /ontology/rdf_type_property_restriction | Add a rdf type property restriction |
OntologyApi | check_ur_is_types | POST /ontology/check_rdf_types | Check the given rdf-types on the given uris |
OntologyApi | create_property | POST /ontology/property | Create a RDF property |
OntologyApi | delete_class_property_restriction | DELETE /ontology/rdf_type_property_restriction | Delete a rdf type property restriction |
OntologyApi | delete_property | DELETE /ontology/property | Delete a property |
OntologyApi | get_base_uri | GET /ontology/base_uri | Return base uri |
OntologyApi | get_classes | GET /ontology/rdf_types | Return classes models definitions with properties for a list of rdf types |
OntologyApi | get_data_properties | GET /ontology/data_properties | Search data properties tree |
OntologyApi | get_linkable_properties | GET /ontology/linkable_properties | Search properties linkable to a domain |
OntologyApi | get_name_space | GET /ontology/name_space | Return namespaces |
OntologyApi | get_object_properties | GET /ontology/object_properties | Search object properties tree |
OntologyApi | get_properties | GET /ontology/properties/{domain} | Search properties tree |
OntologyApi | get_properties_by_domain_hierarchy_using_restrictions | GET /ontology/domain_hierarchy_restrictions | Get restrictions from some super-class domain to one lower down in the hierarchy, ordered by what domain they first appear in. |
OntologyApi | get_property | GET /ontology/property | Return property model definition detail |
OntologyApi | get_rdf_type | GET /ontology/rdf_type | Return class model definition with properties |
OntologyApi | get_shared_resource_instances | GET /ontology/shared_resource_instances | Return the list of shared resource instances |
OntologyApi | get_sub_classes_of | GET /ontology/subclasses_of | Search sub-classes tree of an RDF class |
OntologyApi | get_sub_properties_of | GET /ontology/subproperties_of | Return property list from a parent property |
OntologyApi | get_uri_label | GET /ontology/uri_label | Return associated rdfs:label of an uri if exists |
OntologyApi | get_uri_labels_list | GET /ontology/uris_labels | Return associated rdfs:label of uris if they exist |
OntologyApi | get_uri_types | GET /ontology/uri_types | Return all rdf types of an uri |
OntologyApi | rename_uri | PUT /ontology/{uri}/rename | Rename all occurrences of the given URI |
OntologyApi | search_sub_classes_of | GET /ontology/subclasses_of/search | Search sub-classes tree of an RDF class |
OntologyApi | update_class_property_restriction | PUT /ontology/rdf_type_property_restriction | Update a rdf type property restriction |
OntologyApi | update_property | PUT /ontology/property | Update a RDF property |
OrganizationsApi | create_facility | POST /core/facilities | Create a facility |
OrganizationsApi | create_organization | POST /core/organisations | Create an organisation |
OrganizationsApi | create_site | POST /core/sites | Create a site |
OrganizationsApi | delete_facility | DELETE /core/facilities/{uri} | Delete a facility |
OrganizationsApi | delete_organization | DELETE /core/organisations/{uri} | Delete an organisation |
OrganizationsApi | delete_site | DELETE /core/sites/{uri} | Delete a site |
OrganizationsApi | get_all_facilities | GET /core/facilities/all_facilities | Get all facilities |
OrganizationsApi | get_facilities_by_uri | GET /core/facilities/by_uris | Get facilities by their URIs |
OrganizationsApi | get_facility | GET /core/facilities/{uri} | Get a facility |
OrganizationsApi | get_organization | GET /core/organisations/{uri} | Get an organisation |
OrganizationsApi | get_site | GET /core/sites/{uri} | Get a site |
OrganizationsApi | get_sites_by_uri | GET /core/sites/by_uris | Get a list of sites |
OrganizationsApi | minimal_search_facilities | GET /core/facilities/minimal_search | Search facilities returning minimal embedded information for better performance |
OrganizationsApi | search_facilities | GET /core/facilities | Search facilities |
OrganizationsApi | search_organizations | GET /core/organisations | Search organisations |
OrganizationsApi | search_sites | GET /core/sites | Search all sites |
OrganizationsApi | update_facility | PUT /core/facilities | Update a facility |
OrganizationsApi | update_organization | PUT /core/organisations | Update an organisation |
OrganizationsApi | update_site | PUT /core/sites | Update a site |
PositionsApi | count_moves | GET /core/positions/count | Count moves |
PositionsApi | get_position | GET /core/positions/{uri} | Get the position of an object |
PositionsApi | search_geospatialized_position | POST /core/positions/geospatializedPosition | Search the last geospatialized position of a target for an experiment |
PositionsApi | search_position_history | GET /core/positions/history | Search history of position of an object |
ProjectsApi | create_project | POST /core/projects | Add a project |
ProjectsApi | delete_project | DELETE /core/projects/{uri} | Delete a project |
ProjectsApi | get_project | GET /core/projects/{uri} | Get a project |
ProjectsApi | get_projects_by_uri | GET /core/projects/by_uris | Get projects by their URIs |
ProjectsApi | search_projects | GET /core/projects | Search projects |
ProjectsApi | update_project | PUT /core/projects | Update a project |
ScientificObjectsApi | count_scientific_objects | GET /core/scientific_objects/count | Count scientific objects |
ScientificObjectsApi | create_scientific_object | POST /core/scientific_objects | Create a scientific object for the given experiment |
ScientificObjectsApi | delete_scientific_object | DELETE /core/scientific_objects/{uri} | Delete a scientific object |
ScientificObjectsApi | export_csv | POST /core/scientific_objects/export | Export a given list of scientific object URIs to csv data file |
ScientificObjectsApi | export_geospatial2 | POST /core/scientific_objects/export_geospatial | Export a given list of scientific object URIs to shapefile or geojson |
ScientificObjectsApi | get_scientific_object_data_files_provenances | GET /core/scientific_objects/{uri}/datafiles/provenances | Get provenances of datafiles linked to this scientific object |
ScientificObjectsApi | get_scientific_object_data_provenances | GET /core/scientific_objects/{uri}/data/provenances | Get provenances of data that have been measured on this scientific object |
ScientificObjectsApi | get_scientific_object_detail | GET /core/scientific_objects/{uri} | Get scientific object detail |
ScientificObjectsApi | get_scientific_object_detail_by_experiments | GET /core/scientific_objects/{uri}/experiments | Get scientific object detail for each experiments, a null value for experiment in response means a properties defined outside of any experiment (shared object). |
ScientificObjectsApi | get_scientific_object_variables | GET /core/scientific_objects/{uri}/variables | Get variables measured on this scientific object |
ScientificObjectsApi | get_scientific_objects_children | GET /core/scientific_objects/children | Get list of scientific object children |
ScientificObjectsApi | get_scientific_objects_list_by_uris | POST /core/scientific_objects/by_uris | Get scientific objet list of a given experiment URI |
ScientificObjectsApi | get_used_types | GET /core/scientific_objects/used_types | get used scientific object types |
ScientificObjectsApi | import_csv1 | POST /core/scientific_objects/import | Import a CSV file for the given experiment URI and scientific object type. |
ScientificObjectsApi | search_scientific_objects | GET /core/scientific_objects | Search list of scientific objects |
ScientificObjectsApi | search_scientific_objects_with_geometry_list_by_uris | GET /core/scientific_objects/geometry | Get scientific objet list with geometry of a given experiment URI |
ScientificObjectsApi | update_scientific_object | PUT /core/scientific_objects | Update a scientific object for the given experiment |
ScientificObjectsApi | validate_csv3 | POST /core/scientific_objects/import_validation | Validate a CSV file for the given experiment URI and scientific object type. |
SecurityApi | add_favorite | POST /security/accounts/favorites | Add a favorite |
SecurityApi | add_favorite1 | POST /security/users/favorites | Add a favorite |
SecurityApi | create_account | POST /security/accounts | Add an account |
SecurityApi | create_group | POST /security/groups | Add a group |
SecurityApi | create_person | POST /security/persons | Add a person |
SecurityApi | create_profile | POST /security/profiles | Add a profile |
SecurityApi | create_user | POST /security/users | Add a user |
SecurityApi | delete_account | DELETE /security/accounts/{accountURI} | Delete an account |
SecurityApi | delete_favorite | DELETE /security/accounts/favorites/{uriFavorite} | Delete a favorite |
SecurityApi | delete_favorite1 | DELETE /security/users/favorites/{uriFavorite} | Delete a favorite |
SecurityApi | delete_group | DELETE /security/groups/{uri} | Delete a group |
SecurityApi | delete_profile | DELETE /security/profiles/{uri} | Delete a profile |
SecurityApi | get_account | GET /security/accounts/{uri} | Get an account |
SecurityApi | get_accounts_by_uri | GET /security/accounts/by_uris | Get accounts by their URIs |
SecurityApi | get_all_profiles | GET /security/profiles/all | Get all profiles |
SecurityApi | get_favorites | GET /security/accounts/favorites | Get list of favorites for a user |
SecurityApi | get_favorites1 | GET /security/users/favorites | Get list of favorites for a user |
SecurityApi | get_gdpr_file | GET /security/persons/GDPR | Get RGPD PDF |
SecurityApi | get_group | GET /security/groups/{uri} | Get a group |
SecurityApi | get_groups_by_uri | GET /security/groups/by_uris | Get groups by their URIs |
SecurityApi | get_orcid_record | GET /security/persons/orcid_record | Get infos from an ORCID |
SecurityApi | get_person | GET /security/persons/{uri} | Get a Person |
SecurityApi | get_persons_by_uri | GET /security/persons/by_uris | Get persons by their URIs |
SecurityApi | get_profile | GET /security/profiles/{uri} | Get a profile |
SecurityApi | get_user | GET /security/users/{uri} | Get a user |
SecurityApi | get_user_groups | GET /security/accounts/{uri}/groups | Get groups of a user |
SecurityApi | get_user_groups1 | GET /security/users/{uri}/groups | Get groups of a user |
SecurityApi | get_users_by_uri | GET /security/users/by_uris | Get users by their URIs |
SecurityApi | search_accounts | GET /security/accounts | Search accounts |
SecurityApi | search_groups | GET /security/groups | Search groups |
SecurityApi | search_persons | GET /security/persons | Search persons |
SecurityApi | search_profiles | GET /security/profiles | Search profiles |
SecurityApi | search_users | GET /security/users | Search users |
SecurityApi | update_account | PUT /security/accounts | Update an account |
SecurityApi | update_group | PUT /security/groups | Update a group |
SecurityApi | update_person | PUT /security/persons | Update a person |
SecurityApi | update_profile | PUT /security/profiles | Update a profile |
SecurityApi | update_user | PUT /security/users | Update a user |
SpeciesApi | get_all_species | GET /core/species | get species (no pagination) |
StapleAPIApi | export_ontology_file | GET /staple/ontology_file | Export ontology file for Staple API as turtle syntax |
StapleAPIApi | get_resource_graphs | GET /staple/resource_graph | Get all graphs associated with resources |
SystemApi | get_version_info | GET /core/system/info | get system information |
VariablesApi | classic_export_variable_by_ur_is | POST /core/variables/export_classic_by_uris | export variable by list of uris |
VariablesApi | copy_from_shared_resource_instance | POST /core/variables/copy_from_shared_resource_instance | Copy the selected variables from the shared resource instance |
VariablesApi | create_characteristic | POST /core/characteristics | Add a characteristic |
VariablesApi | create_entity | POST /core/entities | Add an entity |
VariablesApi | create_interest_entity | POST /core/entities_of_interest | Add an entity of interest |
VariablesApi | create_method | POST /core/methods | Add a method |
VariablesApi | create_unit | POST /core/units | Add an unit |
VariablesApi | create_variable | POST /core/variables | Add a variable |
VariablesApi | create_variables_group | POST /core/variables_group | Add a variables group |
VariablesApi | delete_characteristic | DELETE /core/characteristics/{uri} | Delete a characteristic |
VariablesApi | delete_entity | DELETE /core/entities/{uri} | Delete an entity |
VariablesApi | delete_interest_entity | DELETE /core/entities_of_interest/{uri} | Delete an entity of interest |
VariablesApi | delete_method | DELETE /core/methods/{uri} | Delete a method |
VariablesApi | delete_unit | DELETE /core/units/{uri} | Delete an unit |
VariablesApi | delete_variable | DELETE /core/variables/{uri} | Delete a variable |
VariablesApi | delete_variables_group | DELETE /core/variables_group/{uri} | Delete a variables group |
VariablesApi | details_export_variable_by_ur_is | POST /core/variables/export_details_by_uris | export detailed variable by list of uris |
VariablesApi | get_characteristic | GET /core/characteristics/{uri} | Get a characteristic |
VariablesApi | get_characteristics_by_ur_is | GET /core/characteristics/by_uris | Get detailed characteristics by uris |
VariablesApi | get_datatypes | GET /core/variables/datatypes | Get variables datatypes |
VariablesApi | get_entities_by_ur_is | GET /core/entities/by_uris | Get detailed entities by uris |
VariablesApi | get_entity | GET /core/entities/{uri} | Get an entity |
VariablesApi | get_interest_entities_by_ur_is | GET /core/entities_of_interest/by_uris | Get detailed entities of interest by uris |
VariablesApi | get_interest_entity | GET /core/entities_of_interest/{uri} | Get an entity of interest |
VariablesApi | get_method | GET /core/methods/{uri} | Get a method |
VariablesApi | get_methods_by_ur_is | GET /core/methods/by_uris | Get detailed methods by uris |
VariablesApi | get_unit | GET /core/units/{uri} | Get an unit |
VariablesApi | get_units_by_ur_is | GET /core/units/by_uris | Get detailed units by uris |
VariablesApi | get_variable | GET /core/variables/{uri} | Get a variable |
VariablesApi | get_variables_by_ur_is | GET /core/variables/by_uris | Get detailed variables by uris |
VariablesApi | get_variables_group | GET /core/variables_group/{uri} | Get a variables group |
VariablesApi | get_variables_group_by_ur_is | GET /core/variables_group/by_uris | Get variables groups by their URIs |
VariablesApi | search_characteristics | GET /core/characteristics | Search characteristics by name |
VariablesApi | search_entities | GET /core/entities | Search entities by name |
VariablesApi | search_interest_entity | GET /core/entities_of_interest | Search entities of interest by name |
VariablesApi | search_methods | GET /core/methods | Search methods by name |
VariablesApi | search_units | GET /core/units | Search units by name |
VariablesApi | search_variables | GET /core/variables | Search variables |
VariablesApi | search_variables_details | GET /core/variables/details | Search detailed variables by name, long name, entity, characteristic, method or unit name |
VariablesApi | search_variables_groups | GET /core/variables_group | Search variables groups |
VariablesApi | update_characteristic | PUT /core/characteristics | Update a characteristic |
VariablesApi | update_entity | PUT /core/entities | Update an entity |
VariablesApi | update_interest_entity | PUT /core/entities_of_interest | Update an entity of interest |
VariablesApi | update_method | PUT /core/methods | Update a method |
VariablesApi | update_unit | PUT /core/units | Update an unit |
VariablesApi | update_variable | PUT /core/variables | Update a variable |
VariablesApi | update_variables_group | PUT /core/variables_group | Update a variables group |
VueJsApi | get_config | GET /vuejs/config | Return the current configuration |
VueJsApi | get_extension | GET /vuejs/extension/js/{module}.js | Return the front Vue JS extension file to include |
VueJsApi | get_extension_style | GET /vuejs/extension/css/{module}.css | Return the front Vue JS extension css file to include |
VueJsApi | get_theme_config | GET /vuejs/theme/{moduleId}/{themeId}/config | Return the front Vue JS theme configuration |
VueJsApi | get_theme_css | GET /vuejs/theme/{moduleId}/{themeId}/style.css | Return the theme css file |
VueJsApi | get_theme_resource | GET /vuejs/theme/{moduleId}/{themeId}/resource | Return the theme requested resource |
VueJsApi | get_user_config | GET /vuejs/user_config | Return the user-specific configuration |
VueJsOntologyExtensionApi | create_rdf_type | POST /vuejs/owl_extension/rdf_type | Create a custom class |
VueJsOntologyExtensionApi | delete_rdf_type | DELETE /vuejs/owl_extension/rdf_type/{uri} | Delete a RDF type |
VueJsOntologyExtensionApi | get_data_types1 | GET /vuejs/owl_extension/data_types | Return literal datatypes definition |
VueJsOntologyExtensionApi | get_object_types | GET /vuejs/owl_extension/object_types | Return object types definition |
VueJsOntologyExtensionApi | get_rdf_type1 | GET /vuejs/owl_extension/rdf_type | Return rdf type model definition with properties |
VueJsOntologyExtensionApi | get_rdf_type_properties | GET /vuejs/owl_extension/rdf_type_properties | Return class model properties definitions |
VueJsOntologyExtensionApi | get_rdf_types_parameters | GET /vuejs/owl_extension/rdf_types_parameters | Return RDF types parameters for Vue.js application |
VueJsOntologyExtensionApi | set_rdf_type_properties_order | PUT /vuejs/owl_extension/properties_order | Define properties order |
VueJsOntologyExtensionApi | update_rdf_type | PUT /vuejs/owl_extension/rdf_type | Update a custom class |
- AccountCreationDTO
- AccountGetDTO
- AccountUpdateDTO
- ActivityCreationDTO
- ActivityGetDTO
- AgentModel
- Alt
- AnnotationCreationDTO
- AnnotationGetDTO
- AnnotationModel
- AnnotationUpdateDTO
- AnonId
- ApiContactInfoDTO
- ApiExternalDocsDTO
- ApiGitCommitDTO
- ApiLicenseInfoDTO
- ApiModulesInfo
- AreaCreationDTO
- AreaGetDTO
- AreaUpdateDTO
- AuthenticationDTO
- Bag
- BlankNodeId
- BrAPIv1CallDTO
- BrAPIv1CallListResponse
- BrAPIv1DocumentationLinkDTO
- BrAPIv1GermplasmDTO
- BrAPIv1GermplasmListResponse
- BrAPIv1MethodDTO
- BrAPIv1ObservationDTO
- BrAPIv1ObservationListResponse
- BrAPIv1ObservationSummaryDTO
- BrAPIv1ObservationUnitDTO
- BrAPIv1ObservationUnitListResponse
- BrAPIv1ObservationUnitTreatmentDTO
- BrAPIv1ObservationUnitXrefDTO
- BrAPIv1ObservationVariableDTO
- BrAPIv1ObservationVariableListResponse
- BrAPIv1OntologyReferenceDTO
- BrAPIv1ScaleDTO
- BrAPIv1SeasonDTO
- BrAPIv1SingleObservationVariableResponse
- BrAPIv1SingleStudyResponse
- BrAPIv1StudyDTO
- BrAPIv1StudyListResponse
- BrAPIv1SuperStudyDTO
- BrAPIv1TraitDTO
- BrapiDataResponsePart
- BrapiDataResponsePartListBrAPIv1CallDTO
- BrapiDataResponsePartListBrAPIv1GermplasmDTO
- BrapiDataResponsePartListBrAPIv1ObservationDTO
- BrapiDataResponsePartListBrAPIv1ObservationUnitDTO
- BrapiDataResponsePartListBrAPIv1ObservationVariableDTO
- BrapiDataResponsePartListBrAPIv1StudyDTO
- BrapiDataResponsePartListFaidarev1CallDTO
- BrapiDataResponsePartListFaidarev1GermplasmDTO
- BrapiDataResponsePartListFaidarev1LocationDTO
- BrapiDataResponsePartListFaidarev1ObservationVariableDTO
- BrapiDataResponsePartListFaidarev1StudyDTO
- BrapiDataResponsePartListFaidarev1TrialDTO
- CSVCell
- CSVDatatypeError
- CSVDuplicateURIError
- CSVURINotFoundError
- CSVValidationDTO
- CSVValidationModel
- Capabilities
- CharacteristicCreationDTO
- CharacteristicDetailsDTO
- CharacteristicGetDTO
- CharacteristicUpdateDTO
- CopyResourceDTO
- CountItemDTO
- CountItemPeriodDTO
- CountListItemDTO
- CountListItemPeriodDTO
- CredentialDTO
- CredentialsGroupDTO
- Crs
- CsvHeader
- DashboardConfigDTO
- DataCSVValidationDTO
- DataCSVValidationModel
- DataComputedGetDTO
- DataConfidenceDTO
- DataCreationDTO
- DataFileGetDTO
- DataFilePathCreationDTO
- DataGetDTO
- DataGetDetailsDTO
- DataGetSearchDTO
- DataProvenanceModel
- DataSearchDTO
- DataSerieGetDTO
- DataSimpleProvenanceGetDTO
- DataUpdateDTO
- DataVariableSeriesGetDTO
- DeviceCreationDTO
- DeviceGetDTO
- DeviceGetDetailsDTO
- DocumentGetDTO
- EntityCreationDTO
- EntityDetailsDTO
- EntityGetDTO
- EntityUpdateDTO
- ErrorDTO
- ErrorResponse
- EventCreationDTO
- EventDetailsDTO
- EventGetDTO
- EventUpdateDTO
- ExperimentCreationDTO
- ExperimentGetDTO
- ExperimentGetListDTO
- FacilityAddressDTO
- FacilityCreationDTO
- FacilityGetDTO
- FacilityNamedDTO
- FacilityUpdateDTO
- FactorCategoryGetDTO
- FactorCreationDTO
- FactorDetailsGetDTO
- FactorGetDTO
- FactorLevelCreationDTO
- FactorLevelGetDTO
- FactorLevelGetDetailDTO
- FactorUpdateDTO
- Faidarev1CallDTO
- Faidarev1CallListResponse
- Faidarev1ContactDTO
- Faidarev1DataLinkDTO
- Faidarev1DatasetAuthorshipDTO
- Faidarev1GermplasmDTO
- Faidarev1GermplasmListResponse
- Faidarev1LastUpdateDTO
- Faidarev1LocationDTO
- Faidarev1LocationListResponse
- Faidarev1MethodDTO
- Faidarev1ObservationVariableDTO
- Faidarev1ObservationVariableListResponse
- Faidarev1ScaleDTO
- Faidarev1StudyDTO
- Faidarev1StudyListResponse
- Faidarev1StudySummaryDTO
- Faidarev1TraitDTO
- Faidarev1TrialAdditionalInfoDTO
- Faidarev1TrialDTO
- Faidarev1TrialListResponse
- FavoriteCreationDTO
- FavoriteGetDTO
- FavoriteGetGraphNameDTO
- FontConfigDTO
- FrontConfigDTO
- GeoJsonObject
- GeometryDTO
- GermplasmCreationDTO
- GermplasmGetAllDTO
- GermplasmGetSingleDTO
- GermplasmGroupCreationDTO
- GermplasmGroupGetDTO
- GermplasmGroupGetWithDetailsDTO
- GermplasmGroupUpdateDTO
- GermplasmSearchFilter
- GermplasmUpdateDTO
- Graph
- GraphConfigDTO
- GraphEventManager
- GroupCreationDTO
- GroupDTO
- GroupUpdateDTO
- GroupUserProfileDTO
- InterestEntityCreationDTO
- InterestEntityDetailsDTO
- InterestEntityGetDTO
- InterestEntityUpdateDTO
- ListItemDTO
- Literal
- LngLatAlt
- Lock
- MatomoConfigDTO
- MenuItemDTO
- MetadataDTO
- MethodCreationDTO
- MethodDetailsDTO
- MethodGetDTO
- MethodUpdateDTO
- MetricDTO
- MetricPeriodDTO
- Model
- ModelProperty
- MotivationGetDTO
- MotivationModel
- MoveCreationDTO
- MoveDetailsDTO
- MoveUpdateDTO
- NamedResourceDTO
- NamedResourceDTOExperimentModel
- NamedResourceDTOFacilityModel
- NamedResourceDTOFactorLevelModel
- NamedResourceDTOGroupModel
- NamedResourceDTOOrganizationModel
- NamedResourceDTOProjectModel
- NamedResourceDTOSiteModel
- NamedResourceDTOVariableModel
- NamedResourceDTOVariablesGroupModel
- OWLClassPropertyRestrictionDTO
- ObjectNamedResourceDTO
- ObjectUriResponse
- OrcidRecordDTO
- OrderBy
- OrganizationCreationDTO
- OrganizationGetDTO
- OrganizationUpdateDTO
- PaginationDTO
- PersonDTO
- PositionCreationDTO
- PositionGetDTO
- PositionGetDetailDTO
- PrefixMapping
- ProfileCreationDTO
- ProfileGetDTO
- ProfileUpdateDTO
- ProjectCreationDTO
- ProjectGetDTO
- ProjectGetDetailDTO
- PropertiesByDomainDTO
- ProvEntityModel
- ProvenanceCreationDTO
- ProvenanceGetDTO
- ProvenanceUpdateDTO
- RDFDatatype
- RDFList
- RDFNode
- RDFObjectRelationDTO
- RDFPropertyDTO
- RDFPropertyGetDTO
- RDFReaderI
- RDFTypeDTO
- RDFTypeTranslatedDTO
- RDFWriterI
- Resource
- ResourceDagDTO
- ResourceTreeDTO
- RouteDTO
- SPARQLLabel
- SPARQLModelRelation
- ScientificObjectCreationDTO
- ScientificObjectDetailByExperimentsDTO
- ScientificObjectDetailDTO
- ScientificObjectExportDTO
- ScientificObjectNodeDTO
- ScientificObjectNodeWithChildrenDTO
- ScientificObjectUpdateDTO
- Seq
- SharedResourceInstanceDTO
- SiteAddressDTO
- SiteCreationDTO
- SiteGetDTO
- SiteGetListDTO
- SiteUpdateDTO
- SpeciesDTO
- Statement
- StatusDTO
- TargetPositionCreationDTO
- TargetPositionGetDTO
- ThemeConfigDTO
- TokenGetDTO
- TransactionHandler
- URITypesDTO
- URIsListPostDTO
- UnitCreationDTO
- UnitDetailsDTO
- UnitGetDTO
- UnitUpdateDTO
- UserCreationDTO
- UserFrontConfigDTO
- UserGetDTO
- UserUpdateDTO
- VariableCopyResponseDTO
- VariableCreationDTO
- VariableDatatypeDTO
- VariableDetailsDTO
- VariableGetDTO
- VariableUpdateDTO
- VariablesGroupCreationDTO
- VariablesGroupGetDTO
- VariablesGroupUpdateDTO
- VersionInfoDTO
- VueDataTypeDTO
- VueObjectTypeDTO
- VueRDFTypeDTO
- VueRDFTypeParameterDTO
- VueRDFTypePropertyDTO
- Feature
- FeatureCollection
- GeometryCollection
- LineString
- MultiLineString
- MultiPoint
- MultiPolygon
- Point
- Polygon
All endpoints do not require authorization.