update pre-commit setting

.pre-commit-config.yaml

@@ -7,8 +7,17 @@ repos:
       rev: v3.4.0
       hooks:
           - id: trailing-whitespace
+            exclude: ^(sample_setups/jsons/|tests/deprecated)
           - id: end-of-file-fixer
+            exclude: ^(sample_setups/jsons/|tests/deprecated)
           - id: check-yaml
+            exclude: ^(sample_setups/jsons/|tests/deprecated)
+
+    - repo: https://github.com/timothycrosley/isort
+      rev: 5.9.3
+      hooks:
+          - id: isort
+            exclude: ^(sample_setups/jsons/|tests/deprecated)
 
     # Need to use flake8 GitHub mirror due to CentOS git issue with GitLab
     # https://github.com/pre-commit/pre-commit/issues/1206
@@ -18,10 +27,11 @@ repos:
           - id: flake8
             args: ["--config=setup.cfg"]
             additional_dependencies: [flake8-isort]
-            exclude: ^sample_setups/jsons/
+            exclude: ^(sample_setups/jsons/|tests/deprecated)
 
     - repo: https://github.com/pre-commit/mirrors-mypy
       rev: v0.910
       hooks:
           - id: mypy
             args: ["--config=setup.cfg"]
+            exclude: ^(sample_setups/jsons/|tests/deprecated)

setup.cfg

@@ -24,6 +24,28 @@ exclude =
     venv
     *json
 
+[isort]
+multi_line_output=3
+include_trailing_comma=True
+force_grid_wrap=0
+use_parentheses=True
+line_length=88
+
+[pycodestyle]
+max-line-length = 119
+exclude =
+    .tox
+    .git
+    */migrations/*
+    */static/CACHE/*
+    docs
+    node_modules
+    .idea
+    .mypy_cache
+    .pytest_cache
+    *__init__.py
+    venv
+
 [mypy]
 python_version = 3.8
 check_untyped_defs = True
@@ -32,10 +54,6 @@ warn_unused_ignores = True
 warn_redundant_casts = True
 warn_unused_configs = True
 
-[aliases]
-# Define setup.py command aliases here
-test = pytest
-
 [tool:pytest]
 junit_family = xunit2
 addopts = --cov=pcmdi_metrics --cov-report term --cov-report html:tests_coverage_reports/htmlcov --cov-report xml:tests_coverage_reports/coverage.xml -s --ignore tests/deprecated