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Feat cookbook recipe articles #99

Merged
merged 105 commits into from
Feb 9, 2024
Merged

Feat cookbook recipe articles #99

merged 105 commits into from
Feb 9, 2024

Commits on Jul 22, 2023

  1. adding retro recipe

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    MOshima-PIFSC committed Jul 22, 2023
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Commits on Jul 25, 2023

  1. add get SS to pkgdown.yaml

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    MOshima-PIFSC committed Jul 25, 2023
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  2. remove ss executable for clean up

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    MOshima-PIFSC committed Jul 25, 2023
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Commits on Jul 26, 2023

  1. add retrospective article

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    MOshima-PIFSC committed Jul 26, 2023
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  2. add FEAT branch to workflow to trigger pkgdown update

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    MOshima-PIFSC committed Jul 26, 2023
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  3. update retro article

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    MOshima-PIFSC committed Jul 26, 2023
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  4. removing clean up ss exe bc seems like not necessary

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    MOshima-PIFSC committed Jul 26, 2023
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Commits on Jul 27, 2023

  1. update retro article

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    MOshima-PIFSC committed Jul 27, 2023
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  2. remove retro stuff from readme

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    MOshima-PIFSC committed Jul 27, 2023
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  3. minor fix

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    MOshima-PIFSC committed Jul 27, 2023
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  4. debug

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    MOshima-PIFSC committed Jul 27, 2023
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  5. turn off r -cmd-checks on this branch

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    MOshima-PIFSC committed Jul 27, 2023
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  6. change years for xlim

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    MOshima-PIFSC committed Jul 27, 2023
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  7. adding render rmd and commit to repo to workflow

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    MOshima-PIFSC committed Jul 27, 2023
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  8. change file name in workflow

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    MOshima-PIFSC committed Jul 27, 2023
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  9. update gh action

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    MOshima-PIFSC committed Jul 27, 2023
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Commits on Jul 28, 2023

  1. small fix

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  2. update workflow

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    MOshima-PIFSC committed Jul 28, 2023
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  3. fix render command

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    MOshima-PIFSC committed Jul 28, 2023
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  4. installing depends

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    MOshima-PIFSC committed Jul 28, 2023
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  5. update article

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  6. update workflow

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    MOshima-PIFSC committed Jul 28, 2023
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  7. ignore ss.exe

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    MOshima-PIFSC committed Jul 28, 2023
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  8. debugging

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  9. debug

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  10. debug

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  11. debug

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  12. debug

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  13. debug

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    MOshima-PIFSC committed Jul 28, 2023
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  14. update readme.md

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    MOshima-PIFSC committed Jul 28, 2023
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Commits on Jul 29, 2023

  1. check ss

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    MOshima-PIFSC committed Jul 29, 2023
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  2. copy ss over to dir_retro

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    MOshima-PIFSC committed Jul 29, 2023
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  3. run retro in rmd

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    MOshima-PIFSC committed Jul 29, 2023
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Commits on Aug 9, 2023

  1. add residual analysis and some readme changes

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    MOshima-PIFSC committed Aug 9, 2023
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  2. likelihood profile article

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    MOshima-PIFSC committed Aug 9, 2023
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  3. update likelihood

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    MOshima-PIFSC committed Aug 9, 2023
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Commits on Aug 10, 2023

  1. updating readme

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    MOshima-PIFSC committed Aug 10, 2023
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  2. finish likelihood

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    MOshima-PIFSC committed Aug 10, 2023
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  3. add hcxval

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    MOshima-PIFSC committed Aug 10, 2023
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  4. add SSmase to hcxval

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  5. running retro in hcxval

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  6. clean up readme

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    MOshima-PIFSC committed Aug 10, 2023
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  7. add SSrmse function to resids article

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    MOshima-PIFSC committed Aug 10, 2023
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Commits on Aug 11, 2023

  1. remove duplicate check badge and add bootstrap theme

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    MOshima-PIFSC committed Aug 11, 2023
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  2. add jitter article

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    MOshima-PIFSC committed Aug 11, 2023
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  3. add tidyverse dependency in ghaction

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    MOshima-PIFSC committed Aug 11, 2023
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  4. add more depends

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    MOshima-PIFSC committed Aug 11, 2023
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  5. minor fix

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    MOshima-PIFSC committed Aug 11, 2023
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Commits on Jan 4, 2024

  1. add aspm vignette

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    MOshima-PIFSC committed Jan 4, 2024
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  2. fix ss name

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    MOshima-PIFSC committed Jan 4, 2024
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  3. removing incorrect r4ss version

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    MOshima-PIFSC committed Jan 4, 2024
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  4. update r4ss version

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  5. update ss3 url

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    MOshima-PIFSC committed Jan 4, 2024
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  6. minor fix

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    MOshima-PIFSC committed Jan 4, 2024
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  7. file path

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    MOshima-PIFSC committed Jan 4, 2024
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Commits on Jan 5, 2024

  1. use get_ss3_exe function

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    MOshima-PIFSC committed Jan 5, 2024
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  2. remove r4ss from Imports

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    MOshima-PIFSC committed Jan 5, 2024
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  3. r4ss version

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  4. r4ss version

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  5. r4ss version

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  6. add get_ss3_exe fun to vingettes

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  7. r4ss@main in description

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  8. change exe name

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  9. change ss3 version

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    MOshima-PIFSC committed Jan 5, 2024
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  10. fix file paths

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    MOshima-PIFSC committed Jan 5, 2024
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  11. debug jitter

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  12. aspm file path

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Commits on Jan 10, 2024

  1. aspm file path

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  2. update paths

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  3. jitter debug

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  4. jitter debug

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Commits on Jan 11, 2024

  1. eval jitter

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  2. minor fixes to aspm

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    MOshima-PIFSC committed Jan 11, 2024
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Commits on Jan 16, 2024

  1. add future pkg to setup

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    MOshima-PIFSC committed Jan 16, 2024
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  2. don't install future in rmarkdown

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    MOshima-PIFSC committed Jan 16, 2024
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  3. install future in rmd

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    MOshima-PIFSC committed Jan 16, 2024
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Commits on Jan 17, 2024

  1. add updates to pkgdown yml

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  2. add purrr and furrr

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    MOshima-PIFSC committed Jan 17, 2024
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  3. change pak to install_github

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    MOshima-PIFSC committed Jan 17, 2024
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  4. add codespace

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    MOshima-PIFSC committed Jan 17, 2024
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  5. remove r4ss from devcontainer setup

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    MOshima-PIFSC committed Jan 17, 2024
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  6. remove extra package installs

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    MOshima-PIFSC committed Jan 17, 2024
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Commits on Jan 18, 2024

  1. switch to windows machine

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Commits on Jan 30, 2024

  1. Update devcontainer.json 

    wget ss3
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Commits on Jan 31, 2024

  1. use jitter-fix r4ss branch

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  2. Merge branch 'FEAT-cookbook-recipe-articles' of https://github.com/PI… 

    …FSCstockassessments/ss3diags into FEAT-cookbook-recipe-articles
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  3. use fork of r4ss

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  4. use ubuntu-latest

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Commits on Feb 2, 2024

  1. use try-fix-jitter branch

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  2. fix SSgetoutput index

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    MOshima-PIFSC committed Feb 2, 2024
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  3. small changes in vignettes

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  4. clean up vignettes

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Commits on Feb 6, 2024

  1. fix in jitter file names

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  2. increase Njitter

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  3. text fixes

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Commits on Feb 8, 2024

  1. remove example data, deprecated Vignette, and cookbook recipe code

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  2. Merge branch 'main' into FEAT-cookbook-recipe-articles

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    efletcherPIFSC authored Feb 8, 2024
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  3. removed branches from workflows

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Commits on Feb 9, 2024

  1. test-HCxval

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  2. style and docs: run devtools::document() and styler::style_pkg()

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  3. change retroSimple to retrosum.simple

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  4. Merge branch 'FEAT-cookbook-recipe-articles' of https://github.com/PI… 

    …FSCstockassessments/ss3diags into FEAT-cookbook-recipe-articles
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  5. use retroModels object

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  6. adjust test values to match new model

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  7. style and docs: run devtools::document() and styler::style_pkg()

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    MOshima-PIFSC authored and github-actions[bot] committed Feb 9, 2024
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