Merge branch 'third_cran_review_adjust' into 'master'

add doc changes in run_lpjml to cran_comments.md

See merge request lpjml/lpjmlkit!70

.buildlibrary

@@ -1,4 +1,4 @@
-ValidationKey: '19634400'
+ValidationKey: '19653840'
 AutocreateReadme: yes
 AcceptedWarnings:
 - 'Warning: package ''.*'' was built under R version'

.zenodo.json

@@ -1,6 +1,6 @@
 {
   "title": "lpjmlkit: Toolkit for Basic LPJmL Handling",
-  "version": "1.0.10",
+  "version": "1.0.11",
   "description": "<p>A collection of basic functions to facilitate the work with the\n    Dynamic Global Vegetation Model (DGVM) Lund-Potsdam-Jena managed Land\n    (LPJmL) hosted at the Potsdam Institute for Climate Impact Research (PIK).\n    It provides functions for performing LPJmL simulations, as well as reading,\n    processing and writing model-related data such as inputs and outputs or\n    configuration files.<\/p>",
   "creators": [
     {

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: lpjmlkit
 Type: Package
 Title: Toolkit for Basic LPJmL Handling
-Version: 1.0.10
+Version: 1.0.11
 Authors@R: c(
     person("Jannes", "Breier", , "jannesbr@pik-potsdam.de", role = c("aut", "cre"), comment = c(ORCID = "0000-0002-9055-6904")),
     person("Sebastian","Ostberg", , "ostberg@pik-potsdam.de", role = "aut", comment = c(ORCID = "0000-0002-2368-7015")),

README.md

@@ -1,6 +1,6 @@
 # Toolkit for Basic LPJmL Handling <a href=''><img src='inst/img/logo.png' align='right' height='139' /></a>
 
-R package **lpjmlkit**, version **1.0.10**
+R package **lpjmlkit**, version **1.0.11**
 
 [![CRAN status](https://www.r-pkg.org/badges/version/lpjmlkit)](https://cran.r-project.org/package=lpjmlkit) [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.7752812.svg)](https://doi.org/10.5281/zenodo.7752812) [![R build status](https://github.com/PIK-LPJmL/lpjmlkit/workflows/check/badge.svg)](https://github.com/PIK-LPJmL/lpjmlkit/actions) [![codecov](https://codecov.io/gh/PIK-LPJmL/lpjmlkit/branch/master/graph/badge.svg)](https://app.codecov.io/gh/PIK-LPJmL/lpjmlkit) [![r-universe](https://pik-piam.r-universe.dev/badges/lpjmlkit)](https://pik-piam.r-universe.dev/builds)
 
@@ -76,7 +76,7 @@ In case of questions / problems please contact Jannes Breier <jannesbr@pik-potsd
 
 To cite package **lpjmlkit** in publications use:
 
-Breier J, Ostberg S, Wirth S, Minoli S, Stenzel F, Müller C (2023). _lpjmlkit: Toolkit for Basic LPJmL Handling_. doi: 10.5281/zenodo.7752812 (URL: https://doi.org/10.5281/zenodo.7752812), R package version 1.0.10, <URL: https://github.com/PIK-LPJmL/lpjmlkit>.
+Breier J, Ostberg S, Wirth S, Minoli S, Stenzel F, Müller C (2023). _lpjmlkit: Toolkit for Basic LPJmL Handling_. doi: 10.5281/zenodo.7752812 (URL: https://doi.org/10.5281/zenodo.7752812), R package version 1.0.11, <URL: https://github.com/PIK-LPJmL/lpjmlkit>.
 
 A BibTeX entry for LaTeX users is
 
@@ -85,7 +85,7 @@ A BibTeX entry for LaTeX users is
   title = {lpjmlkit: Toolkit for Basic LPJmL Handling},
   author = {Jannes Breier and Sebastian Ostberg and Stephen Björn Wirth and Sara Minoli and Fabian Stenzel and Christoph Müller},
   year = {2023},
-  note = {R package version 1.0.10},
+  note = {R package version 1.0.11},
   doi = {10.5281/zenodo.7752812},
   url = {https://github.com/PIK-LPJmL/lpjmlkit},
 }

cran-comments.md

@@ -3,7 +3,8 @@
 * currently there is no publication of lpjmlkit that could be added to
 DESCRIPTION, if that changes it will be added
 * unexecutable code removed from example sections of functions
-`detect_io_type()`, `read_io()`, `set_header_item()` and `transform()`
+`detect_io_type()`, `read_io()`, `set_header_item()`, `transform()` and
+`run_lpjml()`
 * missing Rd-tag return added to `dim.LPJmLData()`, `dimnames.LPJmLData()`,
 `length.LPJmLData()`, `plot.LPJmLData()` and `summary.LPJmLData()` functions
 * dontrun{} removed from functions where possible: `set_header_item()`