MZA v1.25.02.19

Fixed bugs for conversion of Agilent .d QTOF files (non IM).

MZA v1.24.11.16

• Refactored mzML conversion to track and assign new Scan number if repeated (to address issues seen with mzML converted from Waters and Sciex).
• Added collision energies for Agilent IMS.
• Added precursor information for MS2 and CCScalTIMS for Bruker timsTOF.
• Refactored to use parallel for Bruker timsTOF.
• Updated examples Python and R scripts to better show usage of metadata table to read a spectrum using the metadata info.

MZA v1 improved

• Agilent .d QTOF (i.e. non-ion mobility data) format supported.
• CCS calibration coefficients included as HDF5 dataset if detected in Agilent '.d': CCScalDT = [Tfix, Beta] for DT, and CCScalSLIM = [C0, C1, C2, C3] for SLIM.
• Collision energy added.
• Fixed bug in intensity threshold for mzML and Thermo .raw.
• Bruker .d ion mobility timsTOF supported (improvements in progress, very slow currently).