bioc check

PYangLab · Jun 24, 2024 · 5b3ae84 · 5b3ae84
1 parent 34f6707
commit 5b3ae84
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/vignettes/cepo.Rmd b/vignettes/cepo.Rmd
@@ -291,7 +291,7 @@ hallmarkList <- getGeneSets(species = "Homo sapiens",
                            library = "H")
 
 fgseaRes <- fgsea(pathways = hallmarkList, 
-                  stats    = sort(ds_res_batches$average$stats[,"beta"]),
+                  stats    = sort(as.data.frame(ds_res_batches$average$stats)$beta),
                   minSize = 15,
                   maxSize = 500)