ci: add test for pypi exposed code (#30) #16
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| --- | |
| name: build | |
| on: [push] | |
| jobs: | |
| conda-tests: | |
| name: Test with conda (${{ matrix.os }}) | |
| runs-on: ${{ matrix.os }} | |
| continue-on-error: ${{ matrix.experimental }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - os: ubuntu-20.04 | |
| pip_cache_path: ~/.cache/pip | |
| experimental: false | |
| defaults: | |
| run: | |
| shell: bash -l {0} # For conda | |
| env: | |
| # Increase this value to reset cache if conda.yml and requirements.txt | |
| # have not changed | |
| CACHE_NUMBER: 0 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Checkout and setup python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.10' | |
| architecture: 'x64' | |
| - name: Cache conda | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/conda_pkgs_dir # from: conda-incubator/setup-miniconda@v2 | |
| key: ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ | |
| hashFiles('conda.yml') }} | |
| - name: Cache pip | |
| uses: actions/cache@v2 | |
| with: | |
| path: ${{ matrix.pip_cache_path }} | |
| key: ${{ runner.os }}-pip--${{ env.CACHE_NUMBER }}-${{ | |
| hashFiles('requirements.txt') }} | |
| - name: IC50 - Conda environment setup | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| activate-environment: paccmann_predictor | |
| environment-file: examples/IC50/conda.yml | |
| auto-activate-base: false | |
| use-only-tar-bz2: true # This needs to be set for proper caching | |
| auto-update-conda: true # Required for windows for `use-only-tar-bz2` | |
| - name: IC50 - Install dependencies and run tests | |
| run: | | |
| python3 -m pip install --upgrade pip | |
| pip3 install --no-deps . | |
| python3 -c "import paccmann_predictor" | |
| python3 examples/IC50/train_paccmann.py -h | |
| - name: Affinity - Conda environment setup | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| activate-environment: paccmann_predictor | |
| environment-file: examples/affinity/conda.yml | |
| auto-activate-base: false | |
| use-only-tar-bz2: true # This needs to be set for proper caching | |
| auto-update-conda: true # Required for windows for `use-only-tar-bz2` | |
| - name: Install dependencies and test code | |
| run: | | |
| pip3 install -e . | |
| python3 -c "import paccmann_predictor.models" | |
| - name: Affinity - Install dependencies and run tests | |
| run: | | |
| python3 -m pip install --upgrade pip | |
| pip3 install --no-cache-dir -r examples/affinity/requirements.txt | |
| pip3 install --no-deps . | |
| python3 -c "import paccmann_predictor" | |
| python3 examples/affinity/train_affinity.py -h | |
| - name: Send Slack notification | |
| uses: 8398a7/action-slack@v2 | |
| if: always() | |
| with: | |
| status: ${{ job.status }} | |
| text: "CI Build ${{ matrix.os }}" | |
| author_name: ${{ github.actor }} | |
| env: | |
| SLACK_WEBHOOK_URL: ${{ secrets.SLACK_HOOK_URL }} | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} |