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PacBio

README.md

👋 to PacBio's GitHub space

Are you looking for great tools to analyze your HiFi data?

How about complete workflows for your HiFi data?

Help pages for tools that are running on our long-read platform?

This list is work in progress, check out our repositories for more greatness!

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  1. pbbioconda pbbioconda Public

    PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.

    251 45

  2. ccs ccs Public

    CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)

    117 30

  3. pbmm2 pbmm2 Public

    A minimap2 frontend for PacBio native data formats

    Raku 176 27

  4. pb-metagenomics-tools pb-metagenomics-tools Public

    Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics

    HTML 176 36

  5. trgt trgt Public

    Tandem repeat genotyping and visualization from PacBio HiFi data

    Rust 105 8

  6. hifihla hifihla Public

    An HLA star-calling tool for PacBio HiFi data types

    20 2

Repositories

Showing 10 of 89 repositories
  • HiFi-human-WGS-WDL Public
    PacificBiosciences/HiFi-human-WGS-WDL’s past year of commit activity
    WDL 52 BSD-3-Clause-Clear 29 2 0 Updated Nov 9, 2024
  • wdl-dockerfiles Public
    PacificBiosciences/wdl-dockerfiles’s past year of commit activity
    Python 3 BSD-3-Clause-Clear 1 0 3 Updated Nov 9, 2024
  • wdl-common Public
    PacificBiosciences/wdl-common’s past year of commit activity
    WDL 4 BSD-3-Clause-Clear 6 0 1 Updated Nov 8, 2024
  • HiFi-somatic-WDL Public

    Tumor-normal variant calling workflow using HiFi reads

    PacificBiosciences/HiFi-somatic-WDL’s past year of commit activity
    WDL 12 BSD-3-Clause-Clear 6 0 1 Updated Nov 4, 2024
  • vclust Public

    A method to locate variation clusters

    PacificBiosciences/vclust’s past year of commit activity
    Rust 5 0 0 0 Updated Oct 31, 2024
  • jasmine Public

    Predict 5mC in PacBio HiFi reads

    PacificBiosciences/jasmine’s past year of commit activity
    32 BSD-3-Clause-Clear 1 0 0 Updated Oct 30, 2024
  • pbmm2 Public

    A minimap2 frontend for PacBio native data formats

    PacificBiosciences/pbmm2’s past year of commit activity
    Raku 176 BSD-3-Clause-Clear 27 2 0 Updated Oct 29, 2024
  • IsoSeq Public

    Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads

    PacificBiosciences/IsoSeq’s past year of commit activity
    192 BSD-3-Clause-Clear 62 0 0 Updated Oct 29, 2024
  • barcoding Public

    Lima - Demultiplex Barcoded PacBio Samples

    PacificBiosciences/barcoding’s past year of commit activity
    R 65 BSD-3-Clause-Clear 23 0 0 Updated Oct 29, 2024
  • pbsv Public

    pbsv - PacBio structural variant (SV) calling and analysis tools

    PacificBiosciences/pbsv’s past year of commit activity
    Python 130 BSD-3-Clause-Clear 23 0 0 Updated Oct 29, 2024
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