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1. snpick snpick Public

   snpick is a fast and memory-efficient Rust-based SNP extraction tool designed to handle large genomic alignments with minimal RAM usage and high-speed performance.

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2. get_MNV get_MNV Public

   Identifies multiple SNVs within the same codon, reclassifies them as MNVs, and accurately computes resulting amino acid changes from genomic reads

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3. VIPERA VIPERA Public

   A Snakemake workflow for SARS-CoV-2 Viral Intra-Patient Evolution Reporting and Analysis

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4. mycolorsTB mycolorsTB Public

   R Color package for Mycobacterium tuberculosis complex

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5. fstic fstic Public

   Calculates pairwise distances between samples using alelle frequencies

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6. distree distree Public

   Extracts a distance matrix from a phylogeny (parallel, low-memory)

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