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@PathologyDataScience

Computational and Integrative Pathology

Organization for the Computational and Integrative Pathology Group at Northwestern University

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  1. BCSS BCSS Public

    Use this to download all elements of the BCSS dataset described in: Amgad M, Elfandy H, ..., Gutman DA, Cooper LAD. Structured crowdsourcing enables convolutional segmentation of histology images. …

    Python 160 17

  2. SurvivalNet SurvivalNet Public

    Deep learning survival models

    Python 119 43

  3. SCNN SCNN Public

    Survival Convolutional Neural Networks

    68 18

  4. NuCLS NuCLS Public

    NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation

    Jupyter Notebook 54 13

  5. HiPS HiPS Public

    Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis

    Python 30 6

  6. HistomicsML2 HistomicsML2 Public

    A tool for training machine-learning models with whole-slide imaging datasets

    JavaScript 26 5

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