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@PavlidisLab

Pavlidis lab

The Pavlidis Lab at the University of British Columbia

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  1. neuroexpresso neuroexpresso Public

    📊 Gene expression in neuroexpresso database

    R 18 1

  2. Gemma Gemma Public

    Genomics data re-analysis

    Java 23 6

  3. markerGeneProfile markerGeneProfile Public

    Marker gene profile estimation method used in NeuroExpresso manuscript

    R 14 2

Repositories

Showing 10 of 66 repositories
  • GemBrow Public

    The Gemma Browser

    PavlidisLab/GemBrow’s past year of commit activity
    Vue 4 Apache-2.0 1 27 1 Updated Apr 8, 2025
  • Gemma Public

    Genomics data re-analysis

    PavlidisLab/Gemma’s past year of commit activity
    Java 23 Apache-2.0 6 314 29 Updated Apr 7, 2025
  • aggtools Public
    PavlidisLab/aggtools’s past year of commit activity
    R 0 0 1 0 Updated Apr 4, 2025
  • ermineR Public

    R wrapper for ermineJ

    PavlidisLab/ermineR’s past year of commit activity
    R 6 4 3 0 Updated Apr 4, 2025
  • gemma.R Public

    An R wrapper for the Gemma RESTful API

    PavlidisLab/gemma.R’s past year of commit activity
    R 10 Apache-2.0 1 9 0 Updated Apr 3, 2025
  • sc-annotation-pipeline Public
    PavlidisLab/sc-annotation-pipeline’s past year of commit activity
    Python 0 0 0 0 Updated Apr 3, 2025
  • TR_singlecell Public

    This repo contains the code for my paper on reproducible TR coexpression patterns using single cell RNA-seq

    PavlidisLab/TR_singlecell’s past year of commit activity
    R 0 MIT 0 0 0 Updated Mar 30, 2025
  • pavlab-starter-parent Public

    Curated dependencies for the Pavlidis Lab's Java applications

    PavlidisLab/pavlab-starter-parent’s past year of commit activity
    0 Apache-2.0 0 7 1 Updated Mar 27, 2025
  • rnaseq-pipeline Public

    RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.

    PavlidisLab/rnaseq-pipeline’s past year of commit activity
    Shell 23 Unlicense 5 30 1 Updated Mar 18, 2025
  • bioluigi Public

    Reusable and maintained Luigi tasks to incorporate in bioinformatics pipelines

    PavlidisLab/bioluigi’s past year of commit activity
    Python 9 Apache-2.0 0 6 1 Updated Mar 18, 2025
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