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version 1.3.0

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@Phil9S Phil9S released this 14 Oct 16:45
v1.3.0
5b2264e
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What's Changed

v1.3.0

Features

  • Implementation of support for hg38 genome build (requires reinstalling conda environment or pulling latest docker image). Hg38 can now be used as the genome reference build by setting the appropriate config parameter.
  • Implementation of CRAM file support by specifying the filetype and reference genome file config parameters. NB this functions by decompressing CRAMs to BAMs as Rsamtools (currently) does not support loading CRAM files by default. While the snakemake pipeline will remove BAMs once downstream files are generated, be aware of increased disk usage and batch snakemake jobs accordingly.

Other changes

  • Bumped R version from 3.6.4 to 4.2.0 for package stability with hg38 reference
  • Added additional documentation for newly supported features

Bugs resolved

issue #11

Contributors

Phil9S
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