Added report for test_full from 1.4

Plant-Food-Research-Open · Mar 4, 2024 · aa360c9 · aa360c9
commit aa360c9
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diff --git a/.gitignore b/.gitignore
@@ -0,0 +1 @@
+.DS_Store
diff --git a/hic/FI1.hic b/hic/FI1.hic
diff --git a/hic/FI1.html b/hic/FI1.html
@@ -0,0 +1,93 @@
+<html>
+    <head>
+        <meta charset="UTF-8" />
+        <meta http-equiv="X-UA-Compatible" content="IE=edge" />
+        <title>HiC Contact Map</title>
+        <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+        <link rel="stylesheet" href="https://maxcdn.bootstrapcdn.com/font-awesome/4.2.0/css/font-awesome.min.css" />
+        <link
+            rel="stylesheet"
+            type="text/css"
+            href="https://cdn.jsdelivr.net/npm/juicebox.js@2.4.3/dist/css/juicebox.css"
+        />
+        <script src="https://cdn.jsdelivr.net/npm/juicebox.js@2.4.3/dist/juicebox.min.js"></script>
+        <style>
+            .app-container-wrapper {
+                display: flex;
+                align-items: center;
+                justify-content: center;
+            }
+
+            .header-wrapper {
+                display: flex;
+                align-items: center;
+                justify-content: center;
+            }
+
+            .stats-wrapper {
+                display: flex;
+                align-items: center;
+                justify-content: center;
+            }
+
+            button {
+                background-color: inherit;
+                float: left;
+                border: none;
+                outline: none;
+                cursor: pointer;
+                padding: 14px 16px;
+                transition: 0.3s;
+                font-size: 17px;
+                min-width: 90px;
+                margin: 8px;
+            }
+
+            button:hover {
+                background-color: #ddd;
+            }
+
+            button.active {
+                background-color: rgb(168, 168, 168);
+            }
+
+            .scaffold-heading {
+                font-size: 24px;
+                margin: 8px;
+                font-weight: 500;
+            }
+        </style>
+    </head>
+
+    <body>
+        <div class="app-container-wrapper">
+            <div id="app-container"></div>
+        </div>
+    </body>
+    <script>
+        const currentURLSegments = window.location.href.split("/");
+        currentURLSegments.pop();
+        const baseURL = currentURLSegments.join("/");
+
+        const container = document.getElementById("app-container");
+        const config = {
+            syncDatasets: false,
+            browsers: [
+                {
+                    backgroundColor: "255,255,255",
+                    url: `${baseURL}/FI1.hic`,
+                    name: "FI1.hic",
+                    state: "1,1,1,0,0,1,NONE",
+                    tracks: [
+                        {
+                            name: "Scaffolds",
+                            url: `${baseURL}/bedpe/FI1.assembly.bedpe`,
+                        },
+                    ],
+                },
+            ],
+        };
+        juicebox.init(container, config).then(function (hicBrowser) {});
+    </script>
+</html>
+
diff --git a/hic/bedpe/FI1.assembly.bedpe b/hic/bedpe/FI1.assembly.bedpe
@@ -0,0 +1,9 @@
+chr1	x1	x2	chr2	y1	y2	name	score	strand1	strand2	color
+assembly	0	7872677	assembly	0	7872677	CP031385.1	.	.	.	0,0,255
+assembly	7872678	15477813	assembly	7872678	15477813	CP031386.1	.	.	.	0,0,255
+assembly	15477814	21679764	assembly	15477814	21679764	CP031387.1	.	.	.	0,0,255
+assembly	21679765	24932186	assembly	21679765	24932186	CP031388.1	.	.	.	0,0,255
+assembly	24932187	28367111	assembly	24932187	28367111	CP031389.1	.	.	.	0,0,255
+assembly	28367112	31784748	assembly	28367112	31784748	CP031390.1	.	.	.	0,0,255
+assembly	31784749	34970729	assembly	31784749	34970729	CP031391.1	.	.	.	0,0,255
+assembly	34970730	35023689	assembly	34970730	35023689	CP031392.1	.	.	.	0,0,255