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TEFingerprint

A Python 3 library and command line tool for transposon fingerprinting. This project is currently in a alpha state and rapidly changing.

Contributing:

  • Fork the repository
  • Make your changes on a new branch
  • Submit a pull request to the dev branch of this repository

TEFingerprint requires the following inputs:

  • Genomic paired end reads from target organism
  • Reference genome of target organism
  • Reference library of known tansposons for target organism
  • Optionally, an annotation of known tansposons within the reference genome can be used as an additional source of information

Please see the linked documentation for more information:

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A Python3 library for transposon fingerprinting

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