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Proxies for neoclassical transport of energetic ions #1229

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Proxies for neoclassical transport of energetic ions #1229

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Commits on May 29, 2024

  1. making progress on neoclassical stuff

    @unalmis
    unalmis committed May 29, 2024
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Commits on May 30, 2024

  1. Fix math, results look kinda good now

    @unalmis
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Commits on May 31, 2024

  1. Merge branch 'bounce' into ripple

    @unalmis
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  2. Fix units after change of variables

    @unalmis
    unalmis committed May 31, 2024
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  3. Fix comment discussing Nemov and Velasco Gamma_c

    @unalmis
    unalmis committed May 31, 2024
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  4. Add neo comparison utitilies

    @unalmis
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Commits on Jun 2, 2024

  1. Merge branch 'bounce' into ripple

    @unalmis
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  2. Merge branch 'bounce' into ripple

    @unalmis
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  3. Detach Gamma_c

    @unalmis
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  4. Add Gamma_c to neoclassical compute quantities

    @unalmis
    unalmis committed Jun 2, 2024
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Commits on Jun 3, 2024

  1. Merge branch 'bounce' into ripple

    @unalmis
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  2. Update things after merge

    @unalmis
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  3. Merge branch 'bounce' into ripple

    @unalmis
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  4. Merge branch 'ripple' into Gamma_c

    @unalmis
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  5. Update thing after merge

    @unalmis
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Commits on Jun 4, 2024

  1. Merge branch 'bounce' into ripple

    @unalmis
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  2. Merge branch 'ripple' into Gamma_c

    @unalmis
    unalmis committed Jun 4, 2024
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  3. Add Gamma_c plot

    @unalmis
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Commits on Jun 8, 2024

  1. Normalize effective ripple by B_0 = max_tz |B| instead of B_0 = 1.

    @unalmis
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Commits on Jun 10, 2024

  1. Merge branch 'bounce' into ripple

    @unalmis
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Commits on Jun 11, 2024

  1. Merge branch 'bounce' into ripple

    @unalmis
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  2. Add test and notes

    @unalmis
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  3. Add baseline image test for W7-X effective ripple

    @unalmis
    unalmis committed Jun 11, 2024
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  4. Reduce memory usage in tests_neoclassical

    @unalmis
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Commits on Jun 12, 2024

  1. Interpolate |∇ψ| κ_g together since it is smoother than κ_g alone. 

    Saves memory / speed
    @unalmis
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  2. Merge branch 'ripple' into Gamma_c

    @unalmis
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  3. Merge branch 'ripple' into Gamma_c

    @unalmis
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  4. Merge branch 'bounce' into ripple

    @unalmis
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Commits on Jun 13, 2024

  1. Add effective ripple objective function

    @unalmis
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  2. Add effective ripple magnetic axis limit

    @unalmis
    unalmis committed Jun 13, 2024
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  3. Fix effective ripple label

    @unalmis
    unalmis committed Jun 13, 2024
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  4. Add Gamma_c objective function

    @unalmis
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  5. Fix doc build, and reduce first order dependency amount for effective… 

    … ripple
    @unalmis
    unalmis committed Jun 13, 2024
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  6. Merge branch 'ripple' into Gamma_c

    @unalmis
    unalmis committed Jun 13, 2024
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  7. Fix docstring

    @unalmis
    unalmis committed Jun 13, 2024
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Commits on Jun 15, 2024

  1. Fix wrong alpha_t calculation and add grad(|B|)*b test

    @unalmis
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Commits on Jun 17, 2024

  1. Add quantities in attempt to debug length derivative along field line… 

    … test
    @unalmis
    unalmis committed Jun 17, 2024
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  2. Add finite difference test or parallel gradient

    @unalmis
    unalmis committed Jun 17, 2024
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Commits on Jun 18, 2024

  1. Merge branch 'bounce' into ripple

    @unalmis
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  2. Fix bug with sign of derivative in effective ripple... 

        Interpax's strictly increasing knots requirement enforces dζ > 0 in an
    bounce integral,  which constraints the signs of B^ζ and ∂/∂ζ. The
    signs of B^ζ and (∂|B|/∂ζ)|ρ,a are now automatically corrected to match
    this requirement. This fixes a bug where interpax's spline was fed the
    wrong sign for the derivative
    @unalmis
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  3. Merge branch 'ripple' into Gamma_c

    @unalmis
    unalmis committed Jun 18, 2024
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  4. Update Gamma_c test after merge

    @unalmis
    unalmis committed Jun 18, 2024
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  5. Partially undo previous commit -- 

    The sign of B_z_ra was fine before. It was B_sup_z that needed changing.
    @unalmis
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  6. Merge branch 'bounce' into ripple

    @unalmis
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  7. Merge branch 'ripple' into Gamma_c

    @unalmis
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Commits on Jun 22, 2024

  1. No more nan in effective ripple gradient 

    Refactors compuations in bounce integral and effective ripple to avoid
nan gradients that would arise due to limitations in JAX autodiff.
Although it seems the issue is now that the gradient is zero.
    @unalmis
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  2. Merge branch 'bounce' into ripple

    @unalmis
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  3. Merge branch 'ripple' into Gamma_c

    @unalmis
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  4. Merge branch 'bounce' into ripple

    @unalmis
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  5. Merge branch 'ripple' into Gamma_c

    @unalmis
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Commits on Jun 24, 2024

  1. Add equilibrium.rtz_grid method to avoid circular import and update d… 

    …esc.plotting for source grid funs
    @unalmis
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  2. Merge branch 'ripple' into Gamma_c

    @unalmis
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  3. Fix calls to rtz_grid after merge

    @unalmis
    unalmis committed Jun 24, 2024
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  4. Mark test_parallel_grad xfail

    @unalmis
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Commits on Jun 25, 2024

  1. Merge branch 'bounce' into ripple

    @unalmis
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  2. Merge branch 'ripple' into Gamma_c

    @unalmis
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  3. average before integration to reduce computation

    @unalmis
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  4. Merge branch 'ripple' into Gamma_c

    @unalmis
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  5. average before integration to reduce computation

    @unalmis
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Commits on Jun 28, 2024

  1. Merge branch bounce into ripple

    @unalmis
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Commits on Jul 1, 2024

  1. Merge branch 'bounce' into ripple

    @unalmis
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Commits on Jul 2, 2024

  1. Do review suggestions, remove Quadrature grid from ripple objective 

    which was used just to compute R0. probably not worth the memory
    @unalmis
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  2. Merge branch 'bounce' into ripple

    @unalmis
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  3. Merge branch 'bounce' into ripple

    @unalmis
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  4. Merge branch 'ripple' into Gamma_c

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Commits on Jul 5, 2024

  1. Merge branch 'bounce' into ripple

    @unalmis
    unalmis committed Jul 5, 2024
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  2. Fix comment

    @unalmis
    unalmis committed Jul 5, 2024
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  3. Merge branch 'ripple' into Gamma_c

    @unalmis
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Commits on Jul 8, 2024

  1. Merge with Clebsch branch

    @unalmis
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  2. adding little gamma_c

    Greta Hibbard committed Jul 8, 2024
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  3. Merge branch 'bounce' into gh/Gamma_c 

    merge from bounce to gh/Gamma_c after adding gamma_c proxy
    Greta Hibbard committed Jul 8, 2024
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Commits on Jul 9, 2024

  1. Merge branch 'Gamma_c' into gh/Gamma_c

    Greta Hibbard committed Jul 9, 2024
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  2. merging Gamma_c

    Greta Hibbard committed Jul 9, 2024
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Commits on Jul 11, 2024

  1. Your commit message

    Greta Hibbard committed Jul 11, 2024
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  2. Merge branch 'bounce' into ripple and clean up bloated test so that I… 

    … can actually merge it
    @unalmis
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  3. Leftover merge conflicts

    @unalmis
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  4. Merge branch 'clebsh_basis' into ripple

    @unalmis
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  5. Merge branch 'ripple' into Gamma_c

    @unalmis
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Commits on Jul 16, 2024

  1. remove unused jitable arg causing error

    @dpanici
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Commits on Jul 17, 2024

  1. remove unneeded jitable call

    @dpanici
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Commits on Jul 20, 2024

  1. Merge branch 'bounce' into ripple

    @unalmis
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  2. Remove no longer needed jitable argument in get_profiles

    @unalmis
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  3. Merge branch 'ripple' into Gamma_c

    @unalmis
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Commits on Jul 24, 2024

  1. Merge branch 'bounce' into ripple

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Commits on Jul 25, 2024

  1. Merge branch 'bounce' into ripple

    @unalmis
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  2. Update master compute data

    @unalmis
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  3. Update master compute data again

    @unalmis
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  4. Merge branch 'ripple' into Gamma_c

    @unalmis
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  5. Only get profiles in build of objective

    @unalmis
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  6. Merge branch 'ripple' into Gamma_c

    @unalmis
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  7. Only get profiles in objective build method

    @unalmis
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  8. Merge branch 'bounce' into ripple

    @unalmis
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  9. Merge branch 'bounce' into ripple

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  10. Add num_wells parameter to increase performance

    @unalmis
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  11. Merge branch 'ripple' into Gamma_c

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  12. Add num_wells parameter to increase performance

    @unalmis
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  13. Merge branch 'bounce' into ripple

    @unalmis
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  14. Merge branch 'ripple' into Gamma_c

    @unalmis
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  15. adding GammaC Tutorial

    Greta Hibbard committed Jul 25, 2024
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  16. Add num_wells to objective

    @unalmis
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  17. Merge branch 'ripple' into Gamma_c

    @unalmis
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  18. Add num_wells to Gamma_c objective

    @unalmis
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Commits on Jul 26, 2024

  1. Merge branch 'bounce' into ripple

    @unalmis
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  2. Add num_wells as static variables to compute fun

    @unalmis
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  3. Merge branch 'ripple' into Gamma_c

    @unalmis
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  4. Add num_wells as static parameter to compute fun

    @unalmis
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  5. Use kwargs in simpson integral to match API change in quadax from las… 

    …t commit
    @unalmis
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  6. Merge branch 'ripple' into Gamma_c

    @unalmis
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  7. Specify kwargs for trapezoid integration after quadax API changes fro… 

    …m previous commit
    @unalmis
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  8. fixing typo in QS error test

    Greta Hibbard committed Jul 26, 2024
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  9. fixing typo in QS error test

    Greta Hibbard committed Jul 26, 2024
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  10. fixing comment

    Greta Hibbard committed Jul 26, 2024
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  11. kernel restart

    Greta Hibbard committed Jul 26, 2024
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Commits on Jul 30, 2024

  1. documentation

    Greta Hibbard committed Jul 30, 2024
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  2. documentation

    Greta Hibbard committed Jul 30, 2024
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Commits on Aug 5, 2024

  1. Add Nemov's Gamma_c 

    - Adds compute functions for Nemov's Gamma_c
- Implements Nemov's Gamma_c
- Replaces unused get_extrema function in bounce integral utities with new method
  to return extremum points rather than extremum values
- Fixes test from
  https://github.com/PlasmaControl/DESC/pull/1027/files/148d08d97cf6c08b922d0883700b2758dc9b000c#r1704624731
  so that equality of dependencies is checked.
- Cosmetic: Use floats instead of ints in some places
    @unalmis
    unalmis committed Aug 5, 2024
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  2. Remove hanging plt.show() from last commit

    @unalmis
    unalmis committed Aug 5, 2024
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  3. Fix comment

    @unalmis
    unalmis committed Aug 5, 2024
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  4. Fix another comment

    @unalmis
    unalmis committed Aug 5, 2024
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Commits on Aug 7, 2024

  1. Merge branch 'bounce' into ripple

    @unalmis
    unalmis committed Aug 7, 2024
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  2. Merge branch 'ripple' into Gamma_c

    @unalmis
    unalmis committed Aug 7, 2024
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Commits on Aug 14, 2024

  1. merging Gammac in gh/Gamma_c

    @rahulgaur104
    rahulgaur104 committed Aug 14, 2024
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Commits on Aug 17, 2024

  1. fixing merge conflicts

    @rahulgaur104
    rahulgaur104 committed Aug 17, 2024
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Commits on Aug 18, 2024

  1. Take mean later since doesn't matter for speed and easier to do multi… 

    …ple alpha in general
    @unalmis
    unalmis committed Aug 18, 2024
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  2. Merge branch 'ripple' into Gamma_c

    @unalmis
    unalmis committed Aug 18, 2024
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  3. Fix reshape error raised by JAX by reverting average before pitch int… 

    …egral -

can use multiple alphas now
    @unalmis
    unalmis committed Aug 18, 2024
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  4. Merge branch 'Gamma_c' into gh/Gamma_c

    @rahulgaur104
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  5. Merge branch 'bounce' into ripple

    @unalmis
    unalmis committed Aug 18, 2024
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  6. Merge branch 'ku/root_3d' into ripple

    @unalmis
    unalmis committed Aug 18, 2024
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  7. Merge branch 'ripple' into Gamma_c

    @unalmis
    unalmis committed Aug 18, 2024
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  8. Merge branch 'ku/angles' into Gamma_c

    @unalmis
    unalmis committed Aug 18, 2024
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  9. Use general angles rather than stream function aliases

    @unalmis
    unalmis committed Aug 18, 2024
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Commits on Aug 19, 2024

  1. Merge branch 'Gamma_c' into gh/Gamma_c

    @rahulgaur104
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Commits on Aug 20, 2024

  1. Merge branch 'bounce' into ripple

    @unalmis
    unalmis committed Aug 20, 2024
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  2. Merge branch 'ripple' into Gamma_c

    @unalmis
    unalmis committed Aug 20, 2024
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Commits on Aug 26, 2024

  1. Merge branch 'Gamma_c' into gh/Gamma_c

    @rahulgaur104
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  2. appending swp format files to .gitignore

    @rahulgaur104
    rahulgaur104 committed Aug 26, 2024
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Commits on Aug 27, 2024

  1. adding Gamma_a and Gamma_d; Gamma_a is incorrect, Gamma_d should have… 

    … an option to accept a user-specified threshold
    @rahulgaur104
    rahulgaur104 committed Aug 27, 2024
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Commits on Sep 1, 2024

  1. Merge branch 'bounce' into ripple

    @unalmis
    unalmis committed Sep 1, 2024
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  2. Merge branch 'bounce' into ripple

    @unalmis
    unalmis committed Sep 1, 2024
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Commits on Sep 2, 2024

  1. Update effective ripple computation for all changes in upstream branches

    @unalmis
    unalmis committed Sep 2, 2024
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  2. Merge branch 'utils' into ripple

    @unalmis
    unalmis committed Sep 2, 2024
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  3. Remove test that is now redue to test with effective ripple

    @unalmis
    unalmis committed Sep 2, 2024
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Commits on Sep 3, 2024

  1. Merge branch 'bounce' into ripple

    @unalmis
    unalmis committed Sep 3, 2024
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  2. Same as commit f596dc6 and d382df3

    @unalmis
    unalmis committed Sep 3, 2024
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  3. Fixing Pycharm's automated refactor

    @unalmis
    unalmis committed Sep 3, 2024
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  4. Merge branch 'master' into ripple

    @unalmis
    unalmis authored Sep 3, 2024
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  5. Merge branch 'ripple' into Gamma_c

    @unalmis
    unalmis committed Sep 3, 2024
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  6. Merge branch 'utils' into ripple

    @unalmis
    unalmis committed Sep 3, 2024
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  7. Remove adaptive quadrature for now

    @unalmis
    unalmis committed Sep 3, 2024
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  8. Merge branch 'utils' into ripple

    @unalmis
    unalmis committed Sep 3, 2024
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Commits on Sep 4, 2024

  1. Allow kwargs to bounce.plot

    @unalmis
    unalmis committed Sep 4, 2024
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  2. Merge branch 'ripple' into Gamma_c

    @unalmis
    unalmis committed Sep 4, 2024
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  3. Atone for B0 name change made in pull request #1168

    @unalmis
    unalmis committed Sep 4, 2024
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  4. Merge branch 'utils' into ripple

    @unalmis
    unalmis committed Sep 4, 2024
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  5. Merge branch 'ripple' into Gamma_c

    @unalmis
    unalmis committed Sep 4, 2024
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  6. Merge branch 'utils' into ripple

    @unalmis
    unalmis committed Sep 4, 2024
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  7. Merge branch 'ripple' into Gamma_c

    @unalmis
    unalmis committed Sep 4, 2024
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  8. Update effective ripple objective to work with recent changes to master

    @unalmis
    unalmis committed Sep 4, 2024
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  9. Merge branch 'ripple' into Gamma_c

    @unalmis
    unalmis committed Sep 4, 2024
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  10. Update Gamma_c objective for recent changes on master

    @unalmis
    unalmis committed Sep 4, 2024
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  11. Add Gamma_c_Nemov baseline image for test

    @unalmis
    unalmis committed Sep 4, 2024
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  12. atone for pycharm's bad automated refactor commit number 3

    @unalmis
    unalmis committed Sep 4, 2024
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Commits on Sep 6, 2024

  1. Merge branch 'master' into ripple

    @f0uriest
    f0uriest authored Sep 6, 2024
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Commits on Sep 9, 2024

  1. alpha - pitch plotting for gamma_d

    Greta Hibbard committed Sep 9, 2024
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  2. updated for plotting

    Greta Hibbard committed Sep 9, 2024
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Commits on Sep 15, 2024

  1. Merge commit 'fc8b393' into ripple

    @unalmis
    unalmis committed Sep 15, 2024
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  2. Merge branch 'master' into ripple

    @unalmis
    unalmis committed Sep 15, 2024
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  3. Compute quadrature nodes once outside objective.compute

    @unalmis
    unalmis committed Sep 15, 2024
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  4. Fix nan leak in reverse mode ad for bounce integral

    @unalmis
    unalmis committed Sep 15, 2024
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  5. Fix comment that one poloidal transit is sufficient if axissymetric

    @unalmis
    unalmis committed Sep 15, 2024
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  6. Merge branch 'ripple' into Gamma_c

    @unalmis
    unalmis committed Sep 15, 2024
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  7. Use _constants instead of constants

    @unalmis
    unalmis committed Sep 15, 2024
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  8. Merge branch 'ripple' into Gamma_c

    @unalmis
    unalmis committed Sep 15, 2024
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  9. Allow using other Gamma_c in objective

    @unalmis
    unalmis committed Sep 15, 2024
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Commits on Sep 16, 2024

  1. Improve quadrature over velocity coordiante for effective ripple

    @unalmis
    unalmis committed Sep 16, 2024
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  2. Cleaner solution to b4151d9

    @unalmis
    unalmis committed Sep 16, 2024
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  3. Merge branch 'ripple' into Gamma_c

    @unalmis
    unalmis committed Sep 16, 2024
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  4. black format

    @unalmis
    unalmis committed Sep 16, 2024
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  5. Simplify computation of quad points

    @unalmis
    unalmis committed Sep 16, 2024
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  6. Merge branch 'ripple' into Gamma_c

    @unalmis
    unalmis committed Sep 16, 2024
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  7. Remove now unnecessary code

    @unalmis
    unalmis committed Sep 16, 2024
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  8. Merge branch 'ripple' into Gamma_c

    @unalmis
    unalmis committed Sep 16, 2024
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Commits on Sep 17, 2024

  1. Better quadrature for weakly singular bounce integrals

    @unalmis
    unalmis committed Sep 17, 2024
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  2. Merge branch 'ripple' into Gamma_c

    @unalmis
    unalmis committed Sep 17, 2024
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  3. fix comment about change of variable

    @unalmis
    unalmis committed Sep 17, 2024
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  4. Merge branch 'ripple' into Gamma_c

    @unalmis
    unalmis committed Sep 17, 2024
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  5. Use interior nodes only for more fair test

    @unalmis
    unalmis committed Sep 17, 2024
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  6. Merge branch 'ripple' into Gamma_c

    @unalmis
    unalmis committed Sep 17, 2024
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  7. Add documentation on which quadrature to use

    @unalmis
    unalmis committed Sep 17, 2024
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Commits on Sep 18, 2024

  1. Merge branch 'master' into ripple

    @unalmis
    unalmis committed Sep 18, 2024
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  2. Merge branch 'master' into Gamma_c

    @unalmis
    unalmis committed Sep 18, 2024
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  3. Merge branch 'master' into ripple

    @unalmis
    unalmis committed Sep 18, 2024
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  4. Merge branch 'ripple' into Gamma_c

    @unalmis
    unalmis committed Sep 18, 2024
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  5. Increase test_compute_everything tolerance 

    Due to using |B|^2 instead of jnp.sqrt(|B|^2)**2 in compute functions
the GitHUB CI fails on test_compute everything with he following errors.
So we increase the tolerance.

Not equal to tolerance rtol=1e-10, atol=1e-10
Parameterization: desc.equilibrium.equilibrium.Equilibrium. Name: J^rho.
Mismatched elements: 5 / 660 (0.758%)
Max absolute difference: 2.06564437e-08
Max relative difference: 1.97650683e-09
 x: array([-4.121012e+02, -1.125881e+03, -1.537982e+03, -1.537982e+03,
       -1.125881e+03, -4.121012e+02, -6.978519e+02, -1.423246e+03,
       -1.440419e+03, -2.124563e+03, -2.423728e+03, -1.091549e+03,...
 y: array([-4.121012e+02, -1.125881e+03, -1.537982e+03, -1.537982e+03,
       -1.125881e+03, -4.121012e+02, -6.978519e+02, -1.423246e+03,
       -1.440419e+03, -2.124563e+03, -2.423728e+03, -1.091549e+03,...

Not equal to tolerance rtol=1e-10, atol=1e-10
Parameterization: desc.equilibrium.equilibrium.Equilibrium. Name: F_helical.
Mismatched elements: 5 / 660 (0.758%)
Max absolute difference: 3.14466888e-08
Max relative difference: 1.97650684e-09
 x: array([-1.033077e-09,  3.099232e-09, -4.648847e-09,  1.549616e-09,
        1.033077e-09, -4.648847e-09, -1.095852e+02, -2.269565e+02,
       -2.359033e+02, -3.581634e+02, -4.179317e+02, -1.904907e+02,...
 y: array([-1.033077e-09,  3.099232e-09, -4.648847e-09,  1.549616e-09,
        1.033077e-09, -4.648847e-09, -1.095852e+02, -2.269565e+02,
       -2.359033e+02, -3.581634e+02, -4.179317e+02, -1.904907e+02,...

Not equal to tolerance rtol=1e-10, atol=1e-10
Parameterization: desc.equilibrium.equilibrium.Equilibrium. Name: F_theta.
Mismatched elements: 3 / 660 (0.455%)
Max absolute difference: 1.67492544e-08
Max relative difference: 1.97650688e-09
 x: array([-4.687658e-10,  1.406297e-09, -2.109446e-09,  7.031486e-10,
        4.687658e-10, -2.109446e-09, -4.906491e+01, -1.020250e+02,
       -1.067778e+02, -1.633828e+02, -1.919069e+02, -8.779719e+01,...
 y: array([-4.687658e-10,  1.406297e-09, -2.109446e-09,  7.031486e-10,
        4.687658e-10, -2.109446e-09, -4.906491e+01, -1.020250e+02,
       -1.067778e+02, -1.633828e+02, -1.919069e+02, -8.779719e+01,...

Not equal to tolerance rtol=1e-10, atol=1e-10
Parameterization: desc.equilibrium.equilibrium.Equilibrium. Name: J^zeta.
Mismatched elements: 1 / 660 (0.152%)
Max absolute difference: 1.62435754e-09
Max relative difference: 2.39065063e-10
 x: array([ 6.169842e+01,  6.169842e+01,  6.169842e+01,  6.169842e+01,
        6.169842e+01,  6.169842e+01,  1.094439e+04,  8.052767e+03,
        3.164126e+03, -2.186919e+03, -6.393220e+03, -8.582584e+03,...
 y: array([ 6.169842e+01,  6.169842e+01,  6.169842e+01,  6.169842e+01,
        6.169842e+01,  6.169842e+01,  1.094439e+04,  8.052767e+03,
        3.164126e+03, -2.186919e+03, -6.393220e+03, -8.582584e+03,...

Not equal to tolerance rtol=1e-10, atol=1e-10
Parameterization: desc.equilibrium.equilibrium.Equilibrium. Name: J.
Mismatched elements: 1 / 1980 (0.0505%)
Max absolute difference: 2.29847501e-08
Max relative difference: 2.3906495e-10
 x: array([[-1.179022e-12,  3.689596e+02,  1.645854e+03],
       [ 7.763537e-10,  3.689596e+02,  1.645854e+03],
       [-8.259202e-10,  3.689596e+02,  1.645854e+03],...
 y: array([[-1.179022e-12,  3.689596e+02,  1.645854e+03],
       [ 7.763537e-10,  3.689596e+02,  1.645854e+03],
       [-8.259202e-10,  3.689596e+02,  1.645854e+03],...

Not equal to tolerance rtol=1e-10, atol=1e-10
Parameterization: desc.equilibrium.equilibrium.Equilibrium. Name: F_rho.
Mismatched elements: 6 / 660 (0.909%)
Max absolute difference: 2.30247679e-08
Max relative difference: 3.13879473e-10
 x: array([ 1.044221e+03,  7.644227e+02,  2.797981e+02, -2.797981e+02,
       -7.644227e+02, -1.044221e+03,  8.748079e+02,  6.315174e+02,
        8.434725e+02,  9.728103e+02,  8.031394e+01, -9.269602e+02,...
 y: array([ 1.044221e+03,  7.644227e+02,  2.797981e+02, -2.797981e+02,
       -7.644227e+02, -1.044221e+03,  8.748079e+02,  6.315174e+02,
        8.434725e+02,  9.728103e+02,  8.031394e+01, -9.269602e+02,...

Not equal to tolerance rtol=1e-10, atol=1e-10
Parameterization: desc.equilibrium.equilibrium.Equilibrium. Name: J_phi.
Mismatched elements: 1 / 660 (0.152%)
Max absolute difference: 9.02218744e-09
Max relative difference: 2.3906495e-10
 x: array([ 3.689596e+02,  3.689596e+02,  3.689596e+02,  3.689596e+02,
        3.689596e+02,  3.689596e+02,  6.574153e+04,  4.829832e+04,
        1.893106e+04, -1.305157e+04, -3.808409e+04, -5.107903e+04,...
 y: array([ 3.689596e+02,  3.689596e+02,  3.689596e+02,  3.689596e+02,
        3.689596e+02,  3.689596e+02,  6.574153e+04,  4.829832e+04,
        1.893106e+04, -1.305157e+04, -3.808409e+04, -5.107903e+04,...

Not equal to tolerance rtol=1e-10, atol=1e-10
Parameterization: desc.equilibrium.equilibrium.Equilibrium. Name: J*sqrt(g).
Mismatched elements: 1 / 1980 (0.0505%)
Max absolute difference: 3.49973561e-08
Max relative difference: 2.39065196e-10
 x: array([[-2.577098e-10,  0.000000e+00,  2.590525e-10],
       [ 5.659700e-10,  5.283297e-10, -1.975447e-09],
       [-3.107391e-10, -1.188742e-09,  4.018067e-09],...
 y: array([[-2.577098e-10,  0.000000e+00,  2.590525e-10],
       [ 5.659700e-10,  5.283297e-10, -1.975447e-09],
       [-3.107391e-10, -1.188742e-09,  4.018067e-09],...

Not equal to tolerance rtol=1e-10, atol=1e-10
Parameterization: desc.equilibrium.equilibrium.Equilibrium. Name: J_rho.
Mismatched elements: 1 / 660 (0.152%)
Max absolute difference: 1.72271939e-08
Max relative difference: 1.49087068e-10
 x: array([-4.127112e+02, -1.127548e+03, -1.540259e+03, -1.540259e+03,
       -1.127548e+03, -4.127112e+02,  2.171914e+04,  4.405792e+04,
        2.387998e+04, -1.988408e+04, -4.441021e+04, -2.299714e+04,...
 y: array([-4.127112e+02, -1.127548e+03, -1.540259e+03, -1.540259e+03,
       -1.127548e+03, -4.127112e+02,  2.171914e+04,  4.405792e+04,
        2.387998e+04, -1.988408e+04, -4.441021e+04, -2.299714e+04,...

Not equal to tolerance rtol=1e-10, atol=1e-10
Parameterization: desc.equilibrium.equilibrium.Equilibrium. Name: F_zeta.
Mismatched elements: 3 / 660 (0.455%)
Max absolute difference: 1.86773832e-08
Max relative difference: 1.97650681e-09
 x: array([-4.897653e-10,  1.469296e-09, -2.203944e-09,  7.346479e-10,
        4.897653e-10, -2.203944e-09, -4.639982e+01, -9.736332e+01,
       -1.050441e+02, -1.705320e+02, -2.151820e+02, -1.034384e+02,...
 y: array([-4.897653e-10,  1.469296e-09, -2.203944e-09,  7.346479e-10,
        4.897653e-10, -2.203944e-09, -4.639982e+01, -9.736332e+01,
       -1.050441e+02, -1.705320e+02, -2.151820e+02, -1.034384e+02,...

Not equal to tolerance rtol=1e-10, atol=1e-10
Parameterization: desc.equilibrium.equilibrium.Equilibrium. Name: F.
Mismatched elements: 14 / 1980 (0.707%)
Max absolute difference: 7.244671e-08
Max relative difference: 3.84854726e-09
 x: array([[ 4.185952e+03, -8.299412e-11,  3.296918e-12],
       [ 4.185952e+03,  8.262415e-10, -2.076149e-09],
       [ 4.185952e+03, -9.693418e-10,  2.147146e-09],...
 y: array([[ 4.185952e+03, -8.299412e-11,  3.296918e-12],
       [ 4.185952e+03,  8.262415e-10, -2.076149e-09],
       [ 4.185952e+03, -9.693418e-10,  2.147146e-09],
    @unalmis
    unalmis committed Sep 18, 2024
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Commits on Sep 19, 2024

  1. Merge branch 'master' into ripple

    @unalmis
    unalmis committed Sep 19, 2024
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  2. Removing period argument

    @unalmis
    unalmis committed Sep 19, 2024
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  3. Merge branch 'ripple' into Gamma_c

    @unalmis
    unalmis committed Sep 19, 2024
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  4. Use infinite period for alpha

    @unalmis
    unalmis committed Sep 19, 2024
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Commits on Sep 21, 2024

  1. Use better quadrature for part of integral in Nemov Gamma_c

    @unalmis
    unalmis committed Sep 21, 2024
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  2. Add quad2 kwargs for weak singular integrals

    @unalmis
    unalmis committed Sep 21, 2024
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Commits on Sep 22, 2024

  1. Merge branch 'ku/fourier_bounce_part1' into ripple

    @unalmis
    unalmis committed Sep 22, 2024
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  2. Merge branch 'ku/fourier_bounce_part1' into ripple

    @unalmis
    unalmis committed Sep 22, 2024
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  3. Avoid redundant computation of bounce points

    @unalmis
    unalmis committed Sep 22, 2024
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  4. Merge branch 'ripple' into Gamma_c

    @unalmis
    unalmis committed Sep 22, 2024
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  5. Avoid redundant computation of bounce points

    @unalmis
    unalmis committed Sep 22, 2024
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  6. Merge branch 'ku/fourier_bounce_part1' into ripple

    @unalmis
    unalmis committed Sep 22, 2024
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  7. Complete @f0uriest 's request to compare against Neo 

    https://github.com/PlasmaControl/DESC/pull/1003/files#r1655597705
    @unalmis
    unalmis committed Sep 22, 2024
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  8. Add neo out file to desc repository

    @unalmis
    unalmis committed Sep 22, 2024
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  9. Do remaining review suggestion

    @unalmis
    unalmis committed Sep 22, 2024
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  10. Merge branch 'ripple' into Gamma_c

    @unalmis
    unalmis committed Sep 22, 2024
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  11. Fix linear interpolation for bad neo values

    @unalmis
    unalmis committed Sep 22, 2024
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  12. Merge branch 'ripple' into Gamma_c

    @unalmis
    unalmis committed Sep 22, 2024
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  13. Fix neo script

    @unalmis
    unalmis committed Sep 22, 2024
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  14. Merge branch 'ripple' into Gamma_c

    @unalmis
    unalmis authored Sep 22, 2024
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  15. Merge branch 'ku/fourier_bounce_part1' into ripple

    @unalmis
    unalmis committed Sep 22, 2024
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  16. Merge branch 'ripple' into Gamma_c

    @unalmis
    unalmis committed Sep 22, 2024
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Commits on Sep 24, 2024

  1. Document that Velasco's expression converges to zero

    @unalmis
    unalmis committed Sep 24, 2024
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  2. Merge branch 'ku/fourier_bounce_part1' into ripple

    @unalmis
    unalmis committed Sep 24, 2024
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  3. Update _write_neo

    @unalmis
    unalmis committed Sep 24, 2024
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  4. Merge branch 'ripple' into Gamma_c

    @unalmis
    unalmis committed Sep 24, 2024
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  5. Update after merging

    @unalmis
    unalmis committed Sep 24, 2024
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  6. adding Gamma_d to the latest Gamma_c

    @rahulgaur104
    rahulgaur104 committed Sep 24, 2024
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  7. modifying Gamma_d so alpha and pitch values are easily accessible

    @rahulgaur104
    rahulgaur104 committed Sep 24, 2024
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  8. Merge branch 'master' into ripple

    @unalmis
    unalmis committed Sep 24, 2024
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  9. Review suggestions

    @unalmis
    unalmis committed Sep 24, 2024
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Commits on Sep 25, 2024

  1. Add epsilon 3/2 and effective ripple as distinct

    @unalmis
    unalmis committed Sep 25, 2024
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  2. Merge branch 'ripple' into Gamma_c

    @unalmis
    unalmis committed Sep 25, 2024
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Commits on Sep 26, 2024

  1. Increase entropy of test compute everything to pass test

    @unalmis
    unalmis committed Sep 26, 2024
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  2. Merge branch 'ripple' into Gamma_c

    @unalmis
    unalmis committed Sep 26, 2024
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  3. Fix DESC docs variable name

    @unalmis
    unalmis committed Sep 26, 2024
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  4. Merge branch 'master' into ripple

    @unalmis
    unalmis committed Sep 26, 2024
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  5. Merge branch 'ripple' into Gamma_c

    @unalmis
    unalmis committed Sep 26, 2024
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  6. Simplify latex label

    @unalmis
    unalmis committed Sep 26, 2024
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  7. Merge branch 'master' into ripple

    @unalmis
    unalmis committed Sep 26, 2024
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  8. Add chunk size option

    @unalmis
    unalmis committed Sep 26, 2024
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  9. Merge branch 'ripple' into Gamma_c

    @unalmis
    unalmis committed Sep 26, 2024
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  10. Add chunk_size option

    @unalmis
    unalmis committed Sep 26, 2024
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Commits on Sep 27, 2024

  1. Merge branch 'master' into ripple

    @unalmis
    unalmis committed Sep 27, 2024
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  2. Merge branch 'ripple' into Gamma_c

    @unalmis
    unalmis committed Sep 27, 2024
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  3. Fix name in test

    @unalmis
    unalmis committed Sep 27, 2024
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  4. Merge branch 'ripple' into Gamma_c

    @unalmis
    unalmis committed Sep 27, 2024
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Commits on Sep 28, 2024

  1. merging Gamma_c manually

    @rahulgaur104
    rahulgaur104 committed Sep 28, 2024
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  2. merging latest Gamma stuff manually, Gamma_a has been removed Gamma_d… 

    … changed
    @rahulgaur104
    rahulgaur104 committed Sep 28, 2024
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  3. Merge branch 'master' into gh/Gamma_c

    @rahulgaur104
    rahulgaur104 authored Sep 28, 2024
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  4. fixing tests

    @rahulgaur104
    rahulgaur104 committed Sep 28, 2024
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  5. Merge branch 'gh/Gamma_c' of https://github.com/PlasmaControl/DESC in… 

    …to gh/Gamma_c
    @rahulgaur104
    rahulgaur104 committed Sep 28, 2024
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  6. fixing more tests 2

    @rahulgaur104
    rahulgaur104 committed Sep 28, 2024
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  7. fixing more tests 3

    @rahulgaur104
    rahulgaur104 committed Sep 28, 2024
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Commits on Oct 17, 2024

  1. Apply formatting from black-jupyter

    Greta Hibbard committed Oct 17, 2024
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