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Adding a separate factor for NFP to calculate umbilic configurations #819

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Commits on May 27, 2024

  1. Wrap jit at outer level

    unalmis committed May 27, 2024
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  3. Use uniform quadrature over pitch integral because fat banana orbits …

    …don't matter
    
    for effective ripple and we save memory and speed, and makes differentiating easier
    unalmis committed May 27, 2024
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Commits on May 28, 2024

  1. Add neemov gamma_c

    unalmis committed May 28, 2024
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Commits on May 29, 2024

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Commits on May 30, 2024

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Commits on May 31, 2024

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  4. Add neo comparison utitilies

    unalmis committed May 31, 2024
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Commits on Jun 2, 2024

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  3. Detach Gamma_c

    unalmis committed Jun 2, 2024
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  9. modifying __init__.py

    rahulgaur104 committed Jun 2, 2024
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Commits on Jun 3, 2024

  1. fixing mini bugs

    rahulgaur104 committed Jun 3, 2024
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  3. Update things after merge

    unalmis committed Jun 3, 2024
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Commits on Jun 5, 2024

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Commits on Jun 7, 2024

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Commits on Jun 8, 2024

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Commits on Jun 11, 2024

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  2. Add test and notes

    unalmis committed Jun 11, 2024
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Commits on Jun 13, 2024

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  3. Fix effective ripple label

    unalmis committed Jun 13, 2024
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Commits on Jun 15, 2024

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Commits on Jun 17, 2024

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Commits on Jun 18, 2024

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  2. Fix bug with sign of derivative in effective ripple...

        Interpax's strictly increasing knots requirement enforces dζ > 0 in an
        bounce integral,  which constraints the signs of B^ζ and ∂/∂ζ. The
        signs of B^ζ and (∂|B|/∂ζ)|ρ,a are now automatically corrected to match
        this requirement. This fixes a bug where interpax's spline was fed the
        wrong sign for the derivative
    unalmis committed Jun 18, 2024
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  3. Partially undo previous commit --

    The sign of B_z_ra was fine before. It was B_sup_z that needed changing.
    unalmis committed Jun 18, 2024
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Commits on Jun 22, 2024

  1. No more nan in effective ripple gradient

    Refactors compuations in bounce integral and effective ripple to avoid
    nan gradients that would arise due to limitations in JAX autodiff.
    Although it seems the issue is now that the gradient is zero.
    unalmis committed Jun 22, 2024
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Commits on Jun 24, 2024

  1. Add equilibrium.rtz_grid method to avoid circular import and update d…

    …esc.plotting for source grid funs
    unalmis committed Jun 24, 2024
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  2. Mark test_parallel_grad xfail

    unalmis committed Jun 24, 2024
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Commits on Jun 25, 2024

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Commits on Jun 28, 2024

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Commits on Jul 2, 2024

  1. Do review suggestions, remove Quadrature grid from ripple objective

    which was used just to compute R0. probably not worth the memory
    unalmis committed Jul 2, 2024
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  5. trying to pass tests

    rahulgaur104 committed Jul 2, 2024
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  6. trying to pass tests 2

    rahulgaur104 committed Jul 2, 2024
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  7. trying to pass tests 3

    rahulgaur104 committed Jul 2, 2024
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Commits on Jul 3, 2024

  1. trying to pass tests 5

    rahulgaur104 committed Jul 3, 2024
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  3. trying to pass tests 6

    rahulgaur104 committed Jul 3, 2024
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  6. Add setup method

    unalmis committed Jul 3, 2024
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  8. trying to pass tests 7; adding NFP_umbilic_factor to FourierRZCurve o…

    …bjects in h5 files manually
    rahulgaur104 committed Jul 3, 2024
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  10. trying to pass tests 9

    rahulgaur104 committed Jul 3, 2024
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  11. trying to pass tests 10

    rahulgaur104 committed Jul 3, 2024
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  3. trying to fix tests 16

    rahulgaur104 committed Jul 4, 2024
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  5. trying to fix tests 17

    rahulgaur104 committed Jul 4, 2024
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  3. Fix comment

    unalmis committed Jul 5, 2024
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Commits on Jul 8, 2024

  1. Merge with Clebsch branch

    unalmis committed Jul 8, 2024
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  2. Merge branch 'bounce' into ripple and clean up bloated test so that I…

    … can actually merge it
    unalmis committed Jul 11, 2024
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  4. Leftover merge conflicts

    unalmis committed Jul 11, 2024
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  5. trying to fix tests 1

    rahulgaur104 committed Jul 11, 2024
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  3. trying to pass tests 1

    rahulgaur104 committed Jul 20, 2024
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  4. merging master again

    rahulgaur104 committed Jul 20, 2024
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Commits on Jul 23, 2024

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  2. fixing bad merge

    rahulgaur104 committed Jul 23, 2024
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  4. trying to pass tests 1

    rahulgaur104 committed Jul 23, 2024
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  1. trying to pass tests 2

    rahulgaur104 committed Jul 24, 2024
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  2. trying to pass tests 3

    rahulgaur104 committed Jul 24, 2024
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  2. Update master compute data

    unalmis committed Jul 25, 2024
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  10. Add num_wells to objective

    unalmis committed Jul 25, 2024
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  3. merging master

    rahulgaur104 committed Aug 8, 2024
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Commits on Aug 19, 2024

  1. merging master manually

    rahulgaur104 committed Aug 19, 2024
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Commits on Aug 21, 2024

  1. trying to fix tests 2

    rahulgaur104 committed Aug 21, 2024
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  2. fixing more tests

    rahulgaur104 committed Aug 21, 2024
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Commits on Aug 22, 2024

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  2. Update desc/grid.py 1

    Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
    rahulgaur104 and github-actions[bot] authored Aug 22, 2024
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  3. Update desc/grid.py 2

    Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
    rahulgaur104 and github-actions[bot] authored Aug 22, 2024
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Commits on Aug 23, 2024

  1. merging master

    rahulgaur104 committed Aug 23, 2024
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  2. some more changes

    rahulgaur104 committed Aug 23, 2024
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  2. plotting re-change

    rahulgaur104 committed Aug 24, 2024
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Commits on Aug 27, 2024

  1. merging master manually

    rahulgaur104 committed Aug 27, 2024
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  2. merging master manually

    rahulgaur104 committed Aug 28, 2024
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  2. decoupling umbilic stuff from FourierRZCurve as much as possible; cre…

    …ating a new class that allows us to create an umbilic curve on the boundary
    rahulgaur104 committed Sep 2, 2024
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  2. Same as commit f596dc6 and d382df3

    unalmis committed Sep 3, 2024
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Commits on Sep 4, 2024

  1. Allow kwargs to bounce.plot

    unalmis committed Sep 4, 2024
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  5. recent changes

    rahulgaur104 committed Sep 4, 2024
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  8. merging master manually

    rahulgaur104 committed Sep 4, 2024
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  2. pre-committing

    rahulgaur104 committed Sep 5, 2024
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  2. Cleaner solution to b4151d9

    unalmis committed Sep 16, 2024
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  4. Remove now unnecessary code

    unalmis committed Sep 16, 2024
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Commits on Sep 18, 2024

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  3. Increase test_compute_everything tolerance

    Due to using |B|^2 instead of jnp.sqrt(|B|^2)**2 in compute functions
    the GitHUB CI fails on test_compute everything with he following errors.
    So we increase the tolerance.
    
    Not equal to tolerance rtol=1e-10, atol=1e-10
    Parameterization: desc.equilibrium.equilibrium.Equilibrium. Name: J^rho.
    Mismatched elements: 5 / 660 (0.758%)
    Max absolute difference: 2.06564437e-08
    Max relative difference: 1.97650683e-09
     x: array([-4.121012e+02, -1.125881e+03, -1.537982e+03, -1.537982e+03,
           -1.125881e+03, -4.121012e+02, -6.978519e+02, -1.423246e+03,
           -1.440419e+03, -2.124563e+03, -2.423728e+03, -1.091549e+03,...
     y: array([-4.121012e+02, -1.125881e+03, -1.537982e+03, -1.537982e+03,
           -1.125881e+03, -4.121012e+02, -6.978519e+02, -1.423246e+03,
           -1.440419e+03, -2.124563e+03, -2.423728e+03, -1.091549e+03,...
    
    Not equal to tolerance rtol=1e-10, atol=1e-10
    Parameterization: desc.equilibrium.equilibrium.Equilibrium. Name: F_helical.
    Mismatched elements: 5 / 660 (0.758%)
    Max absolute difference: 3.14466888e-08
    Max relative difference: 1.97650684e-09
     x: array([-1.033077e-09,  3.099232e-09, -4.648847e-09,  1.549616e-09,
            1.033077e-09, -4.648847e-09, -1.095852e+02, -2.269565e+02,
           -2.359033e+02, -3.581634e+02, -4.179317e+02, -1.904907e+02,...
     y: array([-1.033077e-09,  3.099232e-09, -4.648847e-09,  1.549616e-09,
            1.033077e-09, -4.648847e-09, -1.095852e+02, -2.269565e+02,
           -2.359033e+02, -3.581634e+02, -4.179317e+02, -1.904907e+02,...
    
    Not equal to tolerance rtol=1e-10, atol=1e-10
    Parameterization: desc.equilibrium.equilibrium.Equilibrium. Name: F_theta.
    Mismatched elements: 3 / 660 (0.455%)
    Max absolute difference: 1.67492544e-08
    Max relative difference: 1.97650688e-09
     x: array([-4.687658e-10,  1.406297e-09, -2.109446e-09,  7.031486e-10,
            4.687658e-10, -2.109446e-09, -4.906491e+01, -1.020250e+02,
           -1.067778e+02, -1.633828e+02, -1.919069e+02, -8.779719e+01,...
     y: array([-4.687658e-10,  1.406297e-09, -2.109446e-09,  7.031486e-10,
            4.687658e-10, -2.109446e-09, -4.906491e+01, -1.020250e+02,
           -1.067778e+02, -1.633828e+02, -1.919069e+02, -8.779719e+01,...
    
    Not equal to tolerance rtol=1e-10, atol=1e-10
    Parameterization: desc.equilibrium.equilibrium.Equilibrium. Name: J^zeta.
    Mismatched elements: 1 / 660 (0.152%)
    Max absolute difference: 1.62435754e-09
    Max relative difference: 2.39065063e-10
     x: array([ 6.169842e+01,  6.169842e+01,  6.169842e+01,  6.169842e+01,
            6.169842e+01,  6.169842e+01,  1.094439e+04,  8.052767e+03,
            3.164126e+03, -2.186919e+03, -6.393220e+03, -8.582584e+03,...
     y: array([ 6.169842e+01,  6.169842e+01,  6.169842e+01,  6.169842e+01,
            6.169842e+01,  6.169842e+01,  1.094439e+04,  8.052767e+03,
            3.164126e+03, -2.186919e+03, -6.393220e+03, -8.582584e+03,...
    
    Not equal to tolerance rtol=1e-10, atol=1e-10
    Parameterization: desc.equilibrium.equilibrium.Equilibrium. Name: J.
    Mismatched elements: 1 / 1980 (0.0505%)
    Max absolute difference: 2.29847501e-08
    Max relative difference: 2.3906495e-10
     x: array([[-1.179022e-12,  3.689596e+02,  1.645854e+03],
           [ 7.763537e-10,  3.689596e+02,  1.645854e+03],
           [-8.259202e-10,  3.689596e+02,  1.645854e+03],...
     y: array([[-1.179022e-12,  3.689596e+02,  1.645854e+03],
           [ 7.763537e-10,  3.689596e+02,  1.645854e+03],
           [-8.259202e-10,  3.689596e+02,  1.645854e+03],...
    
    Not equal to tolerance rtol=1e-10, atol=1e-10
    Parameterization: desc.equilibrium.equilibrium.Equilibrium. Name: F_rho.
    Mismatched elements: 6 / 660 (0.909%)
    Max absolute difference: 2.30247679e-08
    Max relative difference: 3.13879473e-10
     x: array([ 1.044221e+03,  7.644227e+02,  2.797981e+02, -2.797981e+02,
           -7.644227e+02, -1.044221e+03,  8.748079e+02,  6.315174e+02,
            8.434725e+02,  9.728103e+02,  8.031394e+01, -9.269602e+02,...
     y: array([ 1.044221e+03,  7.644227e+02,  2.797981e+02, -2.797981e+02,
           -7.644227e+02, -1.044221e+03,  8.748079e+02,  6.315174e+02,
            8.434725e+02,  9.728103e+02,  8.031394e+01, -9.269602e+02,...
    
    Not equal to tolerance rtol=1e-10, atol=1e-10
    Parameterization: desc.equilibrium.equilibrium.Equilibrium. Name: J_phi.
    Mismatched elements: 1 / 660 (0.152%)
    Max absolute difference: 9.02218744e-09
    Max relative difference: 2.3906495e-10
     x: array([ 3.689596e+02,  3.689596e+02,  3.689596e+02,  3.689596e+02,
            3.689596e+02,  3.689596e+02,  6.574153e+04,  4.829832e+04,
            1.893106e+04, -1.305157e+04, -3.808409e+04, -5.107903e+04,...
     y: array([ 3.689596e+02,  3.689596e+02,  3.689596e+02,  3.689596e+02,
            3.689596e+02,  3.689596e+02,  6.574153e+04,  4.829832e+04,
            1.893106e+04, -1.305157e+04, -3.808409e+04, -5.107903e+04,...
    
    Not equal to tolerance rtol=1e-10, atol=1e-10
    Parameterization: desc.equilibrium.equilibrium.Equilibrium. Name: J*sqrt(g).
    Mismatched elements: 1 / 1980 (0.0505%)
    Max absolute difference: 3.49973561e-08
    Max relative difference: 2.39065196e-10
     x: array([[-2.577098e-10,  0.000000e+00,  2.590525e-10],
           [ 5.659700e-10,  5.283297e-10, -1.975447e-09],
           [-3.107391e-10, -1.188742e-09,  4.018067e-09],...
     y: array([[-2.577098e-10,  0.000000e+00,  2.590525e-10],
           [ 5.659700e-10,  5.283297e-10, -1.975447e-09],
           [-3.107391e-10, -1.188742e-09,  4.018067e-09],...
    
    Not equal to tolerance rtol=1e-10, atol=1e-10
    Parameterization: desc.equilibrium.equilibrium.Equilibrium. Name: J_rho.
    Mismatched elements: 1 / 660 (0.152%)
    Max absolute difference: 1.72271939e-08
    Max relative difference: 1.49087068e-10
     x: array([-4.127112e+02, -1.127548e+03, -1.540259e+03, -1.540259e+03,
           -1.127548e+03, -4.127112e+02,  2.171914e+04,  4.405792e+04,
            2.387998e+04, -1.988408e+04, -4.441021e+04, -2.299714e+04,...
     y: array([-4.127112e+02, -1.127548e+03, -1.540259e+03, -1.540259e+03,
           -1.127548e+03, -4.127112e+02,  2.171914e+04,  4.405792e+04,
            2.387998e+04, -1.988408e+04, -4.441021e+04, -2.299714e+04,...
    
    Not equal to tolerance rtol=1e-10, atol=1e-10
    Parameterization: desc.equilibrium.equilibrium.Equilibrium. Name: F_zeta.
    Mismatched elements: 3 / 660 (0.455%)
    Max absolute difference: 1.86773832e-08
    Max relative difference: 1.97650681e-09
     x: array([-4.897653e-10,  1.469296e-09, -2.203944e-09,  7.346479e-10,
            4.897653e-10, -2.203944e-09, -4.639982e+01, -9.736332e+01,
           -1.050441e+02, -1.705320e+02, -2.151820e+02, -1.034384e+02,...
     y: array([-4.897653e-10,  1.469296e-09, -2.203944e-09,  7.346479e-10,
            4.897653e-10, -2.203944e-09, -4.639982e+01, -9.736332e+01,
           -1.050441e+02, -1.705320e+02, -2.151820e+02, -1.034384e+02,...
    
    Not equal to tolerance rtol=1e-10, atol=1e-10
    Parameterization: desc.equilibrium.equilibrium.Equilibrium. Name: F.
    Mismatched elements: 14 / 1980 (0.707%)
    Max absolute difference: 7.244671e-08
    Max relative difference: 3.84854726e-09
     x: array([[ 4.185952e+03, -8.299412e-11,  3.296918e-12],
           [ 4.185952e+03,  8.262415e-10, -2.076149e-09],
           [ 4.185952e+03, -9.693418e-10,  2.147146e-09],...
     y: array([[ 4.185952e+03, -8.299412e-11,  3.296918e-12],
           [ 4.185952e+03,  8.262415e-10, -2.076149e-09],
           [ 4.185952e+03, -9.693418e-10,  2.147146e-09],
    unalmis committed Sep 18, 2024
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Commits on Sep 19, 2024

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  2. Removing period argument

    unalmis committed Sep 19, 2024
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  9. Fix neo script

    unalmis committed Sep 22, 2024
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  2. Update _write_neo

    unalmis committed Sep 24, 2024
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  4. Review suggestions

    unalmis committed Sep 24, 2024
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  2. Fix DESC docs variable name

    unalmis committed Sep 26, 2024
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  4. Simplify latex label

    unalmis committed Sep 26, 2024
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  6. Add chunk size option

    unalmis committed Sep 26, 2024
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  2. Fix name in test

    unalmis committed Sep 27, 2024
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  2. Clean up

    unalmis committed Sep 29, 2024
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