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ramonawalls committed Feb 13, 2020
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260 changes: 260 additions & 0 deletions imports/bfo_import.obo

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676 changes: 669 additions & 7 deletions imports/bfo_import.owl

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72 changes: 72 additions & 0 deletions imports/envo_import.obo
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format-version: 1.2
data-version: pco/imports/envo_import/pco/releases/2020-02-13/envo_import.owl/pco/imports/envo_import.obo
default-namespace: ENVO
remark: ENVO is an ontology which represents knowledge about environments,environmental processes, ecosystems, habitats, and related entities. It interoperates with other ontologies in the OBO Foundry and Library. \n\nNew terms or revisions can be requested at https://github.com/EnvironmentOntology/envo/issues/ \n\n\nPlease see www.environmentontology.org for more information and citations.
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/envo/modules/chemical_concentration.owl>) VersionIRI(<null>))) [Axioms: 186 Logical Axioms: 30]
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/envo/modules/entity_attribute.owl>) VersionIRI(<null>))) [Axioms: 114 Logical Axioms: 19]
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/envo/modules/entity_attribute_location.owl>) VersionIRI(<null>))) [Axioms: 132 Logical Axioms: 23]
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/envo/modules/entity_quality_location.owl>) VersionIRI(<null>))) [Axioms: 40 Logical Axioms: 6]
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/envo/modules/process_attribute.owl>) VersionIRI(<null>))) [Axioms: 21 Logical Axioms: 2]
ontology: pco/imports/envo_import.obo
property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0002-4366-3088 xsd:string
property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0002-6601-2165 xsd:string
property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0002-8343-612X xsd:string
property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0003-1604-1512 xsd:string
property_value: http://purl.org/dc/elements/1.1/creator https://orcid.org/0000-0002-6962-2807 xsd:string

[Term]
id: ENVO:00000070
name: construction
def: "A feature that has been constructed by deliberate human effort." [MA:ma]
synonym: "constructed feature" EXACT []
is_a: BFO:0000040
is_a: ENVO:00002297 ! environmental feature
is_a: ENVO:01000813 ! astronomical body part
property_value: IAO:0000116 "\"constructed\" should probably be made something like a quality and this class obsoleted or filled only by inference" xsd:string

[Term]
id: ENVO:00002297
name: environmental feature
def: "A material entity which determines an environmental system." [DOI:10.1186/2041-1480-4-43, NM:nm, ORCID:0000-0002-4366-3088]
comment: A material entity determines an environmental system when its removal would cause the collapse of that system. For example, a seamount determines a seamount environment, acting as its 'hub'. This class is currently being aligned to the Basic Formal Ontology. Following this alignment, its definition and the definitions of its subclasses will be revised.
is_a: BFO:0000040

[Term]
id: ENVO:01000254
name: environmental system
def: "A system which has the disposition to environ one or more material entities." [DOI:10.1186/2041-1480-4-43]
comment: In ENVO's alignment with the Basic Formal Ontology, this class is being considered as a subclass of a proposed BFO class "system". The relation "environed_by" is also under development. Roughly, a system which includes a material entity (at least partially) within its site and causally influences that entity may be considered to environ it. Following the completion of this alignment, this class' definition and the definitions of its subclasses will be revised.
synonym: "environment" EXACT []
xref: EcoLexicon:environment
is_a: BFO:0000040
creation_date: 2013-09-23T16:04:08Z

[Term]
id: ENVO:01000744
name: human dwelling
def: "A self-contained constructed feature used by one or more households as a home, such as a house, apartment, mobile home, houseboat or other 'substantial' structure. A dwelling typically includes nearby outbuildings, sheds etc. within the curtilage of the property, excluding any 'open fields beyond'. It has significance in relation to search and seizure, conveyancing of real property, burglary, trespass, and land use planning." [https://en.wikipedia.org/wiki/Dwelling accessed 11/25/2015]
is_a: ENVO:00000070 ! construction
property_value: IAO:0000116 "See https://github.com/EnvironmentOntology/envo/issues/264 for discussion. This definition needs a lot of clean up and links to household and related classes must be made to form logical definitions for inference to work." xsd:string
property_value: IAO:0000116 "Subclasses will be added by inference." xsd:string

[Term]
id: ENVO:01000813
name: astronomical body part
def: "A material part of an astronomical body." []
subset: envoAstro
subset: envoPolar
is_a: BFO:0000040
is_a: ENVO:00002297 ! environmental feature

[Term]
id: ENVO:01001369
name: tidal mangrove shrubland
alt_id: CMECS:577
def: "A shrubland biome which is densely vegetated by dwarf or short mangroves (and associates) that are generally less than 6 meters in height, is tidally influenced, is located in tropical or subtropical areas." []
comment: This class aligns to the Coastal and Marine Ecological Classification Standard (CMECS). In ENVO, we may adapt the definition for consistency, but the semantics (meaning) of the term should be unaffected. Please consult the CMECS catalogue (https://cmecscatalog.org/) for authoritative and semantically unconstrained definitions. CMECS provides the following notes: "Commonly found on intertidal mud flats along the shores of estuaries. Tidal mangrove shrublands may include immature stands or stunted mature trees that indicate a harsh growing environment. Areas characterized by tall mangroves (> 6 meters) are placed in the Tidal Mangrove Forest Biotic Group. Where tidal amplitude is relatively low, the vegetation forms narrow bands along the coastal plains, and it rarely penetrates inland more than several kilometers along rivers. Where tidal amplitude is greater, mangroves extend further inland along river courses, forming extensive stands in the major river deltas. Also, mangrove cays may occur within the lagoon complex of barrier reefs. The list of biotic communities for this group is long: a few examples are provided below, and the complete list is available in Appendix F"
subset: envoCmecs
subset: envoMarine
xref: https://cmecscatalog.org/cmecs/classification/unit/577.html
is_a: ENVO:01000254 ! environmental system
created_by: http://orcid.org/0000-0002-4366-3088

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