clean up for terra #63
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| on: | |
| pull_request: | |
| branches: | |
| - master | |
| - development | |
| push: | |
| branches: | |
| - master | |
| - development | |
| paths: | |
| - .github/workflows/render-module-rmd.yaml | |
| - fireSense_SpreadPredict.Rmd | |
| - fireSense_SpreadPredict.R | |
| name: Render module Rmd | |
| jobs: | |
| render: | |
| name: Render module Rmd | |
| runs-on: ubuntu-20.04 | |
| env: | |
| RSPM: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest" | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-r@v1 | |
| - uses: r-lib/actions/setup-pandoc@v1 | |
| - name: Install GDAL and other dependencies | |
| run: | | |
| sudo apt-get install -y \ | |
| libcurl4-openssl-dev \ | |
| libgdal-dev \ | |
| libgeos-dev \ | |
| libgit2-dev \ | |
| libglpk-dev \ | |
| libmagick++-dev \ | |
| libproj-dev \ | |
| libudunits2-dev \ | |
| libxml2-dev \ | |
| python3-gdal | |
| - name: Install remotes, knitr, rmarkdown | |
| run: | | |
| install.packages("remotes") | |
| remotes::install_cran("rmarkdown") | |
| remotes::install_cran("knitr") | |
| shell: Rscript {0} | |
| - name: Install SpaDES | |
| run: | | |
| remotes::install_github("PredictiveEcology/Require@development") | |
| remotes::install_github("PredictiveEcology/reproducible@development", dependencies = TRUE) | |
| remotes::install_github("PredictiveEcology/SpaDES.core@development", dependencies = TRUE) | |
| remotes::install_github("PredictiveEcology/SpaDES.tools@development", dependencies = TRUE) | |
| shell: Rscript {0} | |
| - name: Install module package dependencies | |
| run: | | |
| pkgs <- SpaDES.core::packages(modules = "fireSense_SpreadPredict", paths = "..")[[1]] | |
| Require::Require(pkgs) | |
| shell: Rscript {0} | |
| - name: Render module Rmd | |
| run: Rscript -e 'rmarkdown::render("fireSense_SpreadPredict.Rmd", encoding = "UTF-8")' | |
| - name: Commit results | |
| run: | | |
| git config user.email "actions@github.com" | |
| git config user.name "GitHub Actions" | |
| git commit fireSense_SpreadPredict.html -m 'Re-build fireSense_SpreadPredict.Rmd' || echo "No changes to commit" | |
| git push https://${{github.actor}}:${{secrets.GITHUB_TOKEN}}@github.com/${{github.repository}}.git HEAD:${{ github.ref }} || echo "No changes to commit" |