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92 changes: 54 additions & 38 deletions README.html

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48 changes: 28 additions & 20 deletions _sources/README.md
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<img src="thumbnail.png" alt="thumbnail" width="300"/>
<img src="CFC_logo.PNG" alt="thumbnail" width="300"/>

# (Replace_with_your_title) Cookbook
# Caribbeans for Climate: Understanding extreme weather variability in the Caribbean region Cookbook

[![nightly-build](https://github.com/ProjectPythia/cookbook-template/actions/workflows/nightly-build.yaml/badge.svg)](https://github.com/ProjectPythia/cookbook-template/actions/workflows/nightly-build.yaml)
[![Binder](https://binder.projectpythia.org/badge_logo.svg)](https://binder.projectpythia.org/v2/gh/ProjectPythia/cookbook-template/main?labpath=notebooks)
[![DOI](https://zenodo.org/badge/475509405.svg)](https://zenodo.org/badge/latestdoi/475509405)
[![nightly-build](https://github.com/ProjectPythia/CFC-extreme-weather-cookbook/actions/workflows/nightly-build.yaml/badge.svg)](https://github.com/ProjectPythia/CFC-extreme-weather-cookbook/actions/workflows/nightly-build.yaml)
[![Binder](https://binder.projectpythia.org/badge_logo.svg)](https://binder.projectpythia.org/v2/gh/ProjectPythia/CFC-extreme-weather-cookbook/main?labpath=notebooks)
[![DOI](https://zenodo.org/badge/813816008.svg)](https://zenodo.org/badge/latestdoi/813816008)

This Project Pythia Cookbook covers ... (replace `...` with the main subject of your cookbook ... e.g., _working with radar data in Python_)
This Project Pythia Cookbook covers exploring extreme weather variability in the atmosphere and ocean using CMIP6 data.

## Motivation

(Add a few sentences stating why this cookbook will be useful. What skills will you, "the chef", gain once you have reached the end of the cookbook?)
Extreme weather events, both atmospheric and oceanic, are increasing in frequency and intensity as a consequence of anthropogenic warming. The processes responsible for such events and their impacts on Caribbean lives remain to be well understood. Our Caribbeans for Climate community (a community of Caribbean-identified climate scientists, oceanographers, and practitioners) have created a cookbook analyzing Caribbean atmospheric and oceanic extreme weather variability using Coupled Model Intercomparison Project Phase 6 (CMIP6) data. In this notebook, we execute basic statistical analysis to investigate the linkages between extreme atmospheric and oceanic heat-related events and the possible causes behind them.

#### Acknowledgements
We would like to especially thank [Justus Magin](https://github.com/keewis) for his technical support. Without his expertise we could not have been able to efficiently run the extreme SSTs notebook.

## Authors

[First Author](@first-author), [Second Author](@second-author), etc. _Acknowledge primary content authors here_
[Jhordanne Jones](github/jhordannej), [Shanice Bailey](github/shanicetbailey), [Caribbeans For Climate community](https://www.caribbeansforclimate.com/).

### Contributors

<a href="https://github.com/ProjectPythia/cookbook-template/graphs/contributors">
<img src="https://contrib.rocks/image?repo=ProjectPythia/cookbook-template" />
<a href="https://github.com/ProjectPythia/CFC-extreme-weather-cookbook/graphs/contributors">
<img src="https://contrib.rocks/image?repo=ProjectPythia/CFC-extreme-weather-cookbook" />
</a>

## Structure

(State one or more sections that will comprise the notebook. E.g., _This cookbook is broken up into two main sections - "Foundations" and "Example Workflows."_ Then, describe each section below.)
_This cookbook has three sections: "Extreme SSTs" and "Extreme Precipitation" and "Links between atmosphere, ocean and ENSO"._

### Section 1 ( Replace with the title of this section, e.g. "Foundations" )
### Section 1 Extreme SSTs

(Add content for this section, e.g., "The foundational content includes ... ")

### Section 2 ( Replace with the title of this section, e.g. "Example workflows" )
### Section 2 Caribbean precipitation extremes using HighResMIP

In this notebook, we'll examine precipitation extremes using the HighResMIP data. We'll do the following:
- Making subregional-scale plots with the HighResMIP
- Plot spatial maps of linear trends in summertime environmental variables
- Calculate a seasonal indicator of tropical cyclogenesis

### Section 3 Links between atmosphere, ocean and ENSO

(Add content for this section, e.g., "Example workflows include ... ")

Expand Down Expand Up @@ -59,22 +69,20 @@ Jupyter](https://foundations.projectpythia.org/foundations/getting-started-jupyt

If you are interested in running this material locally on your computer, you will need to follow this workflow:

(Replace "cookbook-example" with the title of your cookbooks)

1. Clone the `https://github.com/ProjectPythia/cookbook-example` repository:
1. Clone the `https://github.com/ProjectPythia/CFC-extreme-weather-cookbook.git` repository:

```bash
git clone https://github.com/ProjectPythia/cookbook-example.git
git clone https://github.com/ProjectPythia/CFC-extreme-weather-cookbook.git
```

1. Move into the `cookbook-example` directory
1. Move into the `notebooks` directory
```bash
cd cookbook-example
cd notebooks/
```
1. Create and activate your conda environment from the `environment.yml` file
```bash
conda env create -f environment.yml
conda activate cookbook-example
conda activate CFC-extreme-weather-cookbook
```
1. Move into the `notebooks` directory and start up Jupyterlab
```bash
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