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# pulmonary-MRI-reconstruction
Tools for reconstructing Pulmonary MRI datasets to manage motion

Requires BART https://mrirecon.github.io/bart/
Current tools are built for 3D ultrashort echo time (UTE) MRI acquisitions with pseudo-random spatio-temporal sampling

Sample data has been tested with BART v.0.4.00, please install version later than v.0.4.00
Requirements
* BART https://mrirecon.github.io/bart/ - Sample data has been tested with BART v.0.4.00, please install version later than v.0.4.00
https://github.com/mrirecon/bart/releases/
* MATLAB
* Typically requires 100GB RAM, for 256*256*256 matrix size, 8 channel, 4 motion phase.

Requries MATLAB
Current features
* Supports center-out k-space trajectories (e.g. UTE with radial, cones)
* Soft-gating reconstruction
* Motion-resolved reconstruction
* Dynamic Image Navigator reconstruction

Typically requires 100GB RAM, for 256*256*256 matrix size, 8 channel, 4 motion phase.

Current features being built in
Supports center-out k-space trajectories (e.g. UTE with radial, cones)
Soft-gating reconstruction
Motion-resolved reconstruction
Dynamic Image Navigator reconstruction


An anonymized sample dataset from a volunteer is available on request to test out the methods - please contact peder.larson@ucsf.edu to get a link
Sample Data
* An anonymized sample dataset from a volunteer is available on request to test out the methods - please contact peder.larson@ucsf.edu to get a link


Initial version adapted from
https://github.com/jiangwenwen1231/FB_UTE_Recon


References
https://doi.org/10.1002/mrm.26958

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