This is a repository of the code and slides used in the Pumas virtual Berlin workshop by PumasAI in 2025. The following is the rough timeline which we will try to follow. Pumas 2.6.0 is assumed in this repository.
| Relative time (h) | Activity |
|---|---|
| 0 (1 pm CET) | Setting up the Pumas desktop or cloud environment |
| 0.5 | Basic introduction to Julia |
| 2 | 15-minute break |
| 2.25 | Reading and wrangling data in Julia and Pumas |
| 3 | Pumas model building and estimation workflow |
| 4 | End of day 1 |
| Relative time (h) | Activity |
|---|---|
| 0 (1 pm CET) | Model diagnostic metrics and plots |
| 0.75 | Non-Gaussian random effects |
| 1.25 | Uncertainty in population parameters |
| 2 | 15-minute break |
| 2.25 | Simulation and prediction |
| 3 | Introduction to Bayesian estimation |
| 4 | End of day 2 |
| Relative time (h) | Activity |
|---|---|
| 0 (1 pm CET) | Counter-factual simulation and dose selection |
| 1 | Tumor growth dynamics modeling |
| 2 | 15-minute break |
| 2.25 | Survival modeling |
| 3.5 | Introduction to DeepPumas |
| 4 | End of day 3 |