Upgrade and use `ruff==0.4.8` and support `numpy>=2.0.0` (#176) #524

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Run time

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Job	Run time
test_python (3.8)	1m 42s
test_python (3.9)	2m 17s
test_python (3.10)	1m 49s
test_python (3.11)	1m 49s
test_python (3.12)	1m 57s
	9m 34s