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Update README file (#55)
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@haobibo
haobibo authored Sep 23, 2020
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Expand Up @@ -44,7 +44,7 @@ With Docker and `QPod`, you

### 0. Have docker installed on your laptop/server - Linux (e.g.: Ubuntu LTS) / Windows (>=10) / macOS

- Install **Docker >= 19.03**: `docker-ce` ( community version & free: [Linux](https://hub.docker.com/search/?offering=community&type=edition&operating_system=linux) | [macOS](https://download.docker.com/mac/stable/Docker.dmg) | [Windows](https://download.docker.com/win/stable/Docker%20for%20Windows%20Installer.exe) ) or [docker-ee](https://hub.docker.com/search/?offering=enterprise&type=edition) (enterprise version & paid) on your laptop/server. **Docker installed from default Ubuntu/CentOS repository probably won't work for GPU!**
- Install **Docker >= 19.03**: `docker-ce` ( community version & free: [Linux](https://hub.docker.com/search/?offering=community&type=edition&operating_system=linux) | [macOS](https://download.docker.com/mac/stable/Docker.dmg) | [Windows](https://download.docker.com/win/stable/Docker%20Desktop%20Installer.exe) ) or [docker-ee](https://hub.docker.com/search/?offering=enterprise&type=edition) (enterprise version & paid) on your laptop/server. **Docker installed from default Ubuntu/CentOS repository probably won't work for GPU!**
- If you want to use *NVIDIA GPUs* with `QPod`, Linux server is **required**. After installing **Docker >= 19.03**, also install both the [`NVIDIA driver`](https://github.com/NVIDIA/nvidia-docker/wiki/Frequently-Asked-Questions#how-do-i-install-the-nvidia-driver) and the latest version of [`nvidia-container-toolkit`](https://github.com/NVIDIA/nvidia-docker#quickstart) to use the GPUs in containers.

### 1. Choose the features and choose a folder on your disk
Expand All @@ -66,7 +66,7 @@ Typically, you can choose `full` / `full-cuda` if you have enough disk space and
| py-nlp | https://hub.docker.com/r/qpod/py-nlp | qpod/base | Python environment customized for NLP tasks. |
| py-cv | https://hub.docker.com/r/qpod/py-cv | qpod/base | Python environment customized for Computer Vision tasks. |
| py-bio | https://hub.docker.com/r/qpod/py-bio | qpod/base | Python environment customized for Bioinfo tasks. |
| py-chem | https://hub.docker.com/r/qpod/chem | qpod/base | Python environment customized for Computational Chemistry tasks. |
| py-chem | https://hub.docker.com/r/qpod/py-chem | qpod/base | Python environment customized for Computational Chemistry tasks. |
| py-std | https://hub.docker.com/r/qpod/py-std | qpod/base | Python environment including all the packages mentioned above installed. |
| py-jdk | https://hub.docker.com/r/qpod/py-jdk | qpod/base | `py-std` plus OpenJDK. (no LaTex) |
| r-mini | https://hub.docker.com/r/qpod/r-mini | qpod/base | Minimal R environment -- no JDK, no R data science packages, no LaTex. |
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