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scVelo - RNA velocity generalized through dynamical modeling

scVelo is a scalable toolkit for RNA velocity analysis in single cells, based on Bergen et al. (Nature Biotech, 2020).

This repository hosts the scVelo datasets, tutorials and reproducibility notebooks.

For further information visit the main repository or scvelo.org.

Name		Name	Last commit message	Last commit date
Latest commit History 94 Commits
_static		_static
data		data
.gitignore		.gitignore
DentateGyrus.ipynb		DentateGyrus.ipynb
DifferentialKinetics.ipynb		DifferentialKinetics.ipynb
DynamicalModeling.ipynb		DynamicalModeling.ipynb
ForebrainGlut.ipynb		ForebrainGlut.ipynb
Makefile		Makefile
NatureBiotechCover.ipynb		NatureBiotechCover.ipynb
Pancreas.ipynb		Pancreas.ipynb
README.rst		README.rst
VelocityBasics.ipynb		VelocityBasics.ipynb
conf.py		conf.py
index.rst		index.rst
paper_concept(Fig.1).ipynb		paper_concept(Fig.1).ipynb
paper_dentategyrus(Fig.2).ipynb		paper_dentategyrus(Fig.2).ipynb
paper_pancreas(Fig.3).ipynb		paper_pancreas(Fig.3).ipynb
paper_runtime(Fig.S9).ipynb		paper_runtime(Fig.S9).ipynb
paper_simulation(Supp.Figs.).ipynb		paper_simulation(Supp.Figs.).ipynb
requirements.txt		requirements.txt